Heatmap: Cluster_90 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
0.1 -1.78 -1.65 -0.41 0.27 -0.76 -0.8 -0.49 -0.47 -0.62 0.01 0.6 -0.25 -2.62 -1.88 -2.67 -2.26 -1.2 -1.42 -1.79 0.19 0.23 2.48 2.1 -0.36 -0.13
- - - - - - - - - - -1.5 - - - -1.59 - -1.54 - - - 0.49 -0.27 3.53 2.51 1.73 1.14
0.46 -0.22 -0.64 -0.18 -0.57 0.12 0.19 0.16 -0.04 0.4 0.29 0.28 0.09 -1.56 -1.8 -2.72 -0.65 0.38 -0.01 -0.65 -2.92 1.13 0.68 -0.99 1.07 0.64
-2.98 -2.23 -1.45 -0.31 -0.83 -0.45 -1.39 -0.31 -0.69 -3.2 0.61 0.68 0.26 -0.49 -2.28 -2.13 -1.31 -0.71 -1.08 -3.2 1.23 -2.44 3.05 0.74 -0.44 -0.05
1.4 -2.58 - -1.76 -1.13 -2.47 - - -2.73 -2.76 -0.43 -0.04 - -2.88 -1.97 -1.74 - -0.03 - -2.8 1.45 -0.24 3.45 0.16 0.32 0.62
- -0.7 - - -1.96 -0.96 - -1.98 -1.88 1.38 1.81 -0.19 -1.47 -2.03 - - -0.66 - - -1.19 -0.39 -0.67 3.18 1.47 0.37 -0.07
- - - -0.6 - - - - 0.53 - - - -0.16 - - - - - - - - - 4.41 - 0.77 -
-0.32 0.12 -0.79 - -0.83 -1.11 1.04 - -0.89 -0.1 0.54 1.09 -1.12 - -1.27 -0.03 -0.82 - - - 1.87 0.4 2.88 - -0.63 -
- -1.39 - - - - - - - - -1.63 - - -1.23 0.11 -1.5 -1.41 0.05 0.7 0.07 2.02 - 3.33 -0.35 1.65 0.42
-0.38 -3.4 -2.75 -0.64 -0.08 0.28 0.54 -0.37 0.33 0.44 0.23 -0.18 -0.24 -1.09 -3.06 - - -0.59 -0.89 -2.36 1.57 -3.3 2.78 0.35 -1.46 -0.22
1.13 - -0.89 - - - - -1.0 - - 0.66 0.21 0.53 - - -0.9 - - -1.24 - -0.24 - 3.4 1.11 0.46 1.45
-0.88 -1.6 - - -0.25 - -1.53 - -1.69 - - - - -2.32 0.06 -0.67 -0.52 -0.01 0.79 - 2.36 - 3.56 0.46 - -
- - - - - - - - - - - - - - - - -1.25 0.22 0.42 -1.54 1.7 1.05 3.37 1.71 -0.67 1.68
- - - - - - - - - - - - - 1.59 - - - - - - 2.42 - 4.14 - - -
0.37 -0.43 -1.56 -1.58 -3.07 -1.51 -0.57 -1.38 -1.69 -0.61 -1.12 -0.29 -1.8 0.22 0.14 -0.04 -2.07 -0.24 -2.81 -1.05 1.32 0.04 2.69 -0.58 0.71 1.02
- - - - - - - - - - - - - - - - - - - - - - 4.7 - - -
- - - - - - - - - - - - - - - - - - - - 2.13 - 4.44 - - -
0.83 -0.58 -2.0 -0.12 -0.82 -0.87 -0.71 -1.94 -2.96 - -0.06 -0.9 -0.06 -1.27 - -0.58 -2.77 -0.89 -0.71 -2.35 -0.3 0.77 2.45 0.75 0.9 1.88
1.22 -0.71 -1.22 -2.04 -1.4 -0.73 -0.98 -0.91 -0.58 -0.41 -0.43 0.11 0.89 -1.6 -0.9 -1.4 -0.93 -1.04 -0.96 -0.88 -0.95 0.53 2.55 1.24 -0.15 -0.17
-0.86 -1.84 -0.02 0.5 0.06 -0.55 0.19 -1.3 -0.24 0.07 0.53 0.24 0.31 0.21 -0.56 -0.14 -0.8 -2.53 0.29 -1.36 -0.31 -2.69 2.39 0.76 -2.1 -0.94
- - - -0.3 - - 1.65 -0.17 -0.34 -0.43 -0.42 - - - 0.52 - -0.18 - 0.61 0.39 - - 3.48 - - 1.36
1.25 -1.31 -0.85 0.31 0.58 -0.67 -0.01 -0.16 -1.93 -0.2 0.65 -0.82 -0.37 -3.5 - -3.02 -2.94 -0.63 -1.19 -2.26 0.75 -1.2 1.55 -0.37 1.92 1.09
- - - - - - - - - - - - - - - - - - - - 1.8 - 4.49 - - -
- - - 0.14 - 1.43 - 1.4 - - - - 1.62 0.02 - - - - 0.83 -0.14 -0.26 - 3.37 - - 0.68
- 0.02 - - - - - - -1.16 - - - -1.25 - - -1.0 - -1.74 0.08 - 2.47 -0.47 3.3 - - 2.62
0.41 -0.7 -0.83 -1.87 -0.9 - - - -0.38 - -2.02 - -0.28 -1.54 -0.08 - 1.09 0.91 -2.31 -2.33 0.77 0.03 2.32 0.77 1.32 1.69
- - - -7.14 - -5.85 - - - - - - - - - - - - - - 2.21 0.18 2.23 3.46 1.56 0.62
-6.16 - - - -7.28 - - - - - - - - - - - - - - - 2.27 0.29 2.32 3.36 1.66 0.56
-2.54 -3.21 - -1.54 -4.27 -2.15 -1.48 -1.31 -2.42 -2.97 -0.76 -1.25 -1.32 -4.62 -4.71 -3.57 - -2.06 - -3.15 2.04 -2.15 3.07 1.72 1.43 1.75
- - - - - - - - - - - - - - - - - - - - 3.93 - 3.43 - - -
-2.49 -1.12 -1.76 -0.41 0.38 0.39 0.89 0.27 -2.75 -0.44 -1.47 -1.98 -2.71 -0.13 0.3 -0.53 -0.05 1.26 0.47 -0.33 0.7 -0.85 2.12 0.2 -1.63 -0.65
-0.76 -1.08 -0.58 0.12 -0.17 0.1 0.44 0.15 0.7 0.17 0.05 -0.21 -1.0 -1.51 -0.21 -0.06 0.41 -0.05 0.6 0.2 0.88 -2.18 1.34 -0.16 -2.6 -0.29
-0.08 -2.03 -1.61 -2.66 -1.26 -2.36 - -2.72 -0.26 -0.7 0.81 -0.52 -0.07 -1.46 -2.71 - - -2.76 0.66 - 1.28 - 3.65 -0.13 -2.26 -1.53
-2.07 - - - - - - - - - -1.23 -2.09 -2.31 -1.05 - - -2.0 -2.79 -2.56 - 2.85 -1.21 3.93 -0.6 -2.82 -2.78
-0.68 - - -2.01 - - -2.76 -3.08 -1.39 - 0.7 1.3 -1.13 - - -3.07 - -0.91 -1.0 - -3.41 0.7 2.84 0.67 2.13 1.99
-0.9 0.27 -3.18 -1.35 -1.57 -0.2 -0.84 -1.54 -1.37 -1.15 -0.63 -0.86 -2.78 -1.89 -3.43 -0.71 -2.98 -0.79 0.57 1.03 1.77 - 3.24 -0.16 -2.82 -1.53
-2.83 -1.95 -2.53 -1.54 - -3.28 -3.32 - -0.04 0.19 0.44 0.48 - -1.89 -1.69 -2.39 -1.74 -2.53 -1.44 - 1.6 - 3.34 1.78 -1.59 0.57
- -0.64 - 0.78 -1.18 0.36 - -0.86 0.17 - - - - -1.47 -1.13 - - - -0.89 - 1.24 -1.28 3.98 - -1.5 -
-1.61 - -2.55 -2.59 -0.98 - -0.36 -2.33 -2.56 -1.27 -0.81 -2.46 -0.08 -1.39 -2.8 -1.08 0.16 0.33 -0.84 -2.63 0.78 -0.3 3.32 1.06 -0.13 0.99
- - - - - - - - - - - - - - - - - - - - 2.54 - 4.34 - - -
-2.19 -0.29 -0.48 -0.64 -1.09 -0.01 0.03 0.06 -1.3 -0.31 -0.39 -1.26 -0.5 -3.26 -2.18 -2.2 -1.96 -3.26 -2.2 -3.05 -1.17 -3.07 3.7 0.89 -2.74 -2.21
0.25 -0.96 -3.01 -1.55 -2.7 -2.28 -0.78 -0.5 -0.59 -1.1 -0.47 0.45 -0.77 -1.48 -2.72 -2.53 -2.79 -1.41 -3.61 -2.82 -0.7 0.04 3.24 1.79 0.15 0.36
- - - 2.1 - - - - - - - - - - - - - - 1.66 - 1.08 - 3.46 - - 2.44
-0.48 -0.51 -0.76 0.47 -0.45 0.85 0.42 0.05 -1.72 -1.83 -0.49 -2.67 -1.57 -2.12 -1.37 -0.39 -0.28 -0.51 - - 2.69 -0.57 1.88 -1.58 0.05 -0.28
-0.44 -0.65 -0.2 -0.69 -0.78 -0.38 -0.2 -0.33 -0.2 -1.2 -0.92 0.23 -1.44 0.43 -0.45 0.44 -0.55 -0.5 -0.63 -0.56 -0.11 -0.0 0.99 0.93 1.51 0.93
-0.36 - - -1.72 - - - -0.92 -1.82 -1.89 0.18 -1.71 - -1.46 -2.05 - - -2.39 - - 2.06 0.84 3.23 1.73 1.0 -0.06
- -1.97 -1.43 - - - - - - - - - -2.12 - - - - -3.14 -1.56 -2.87 3.48 -2.34 3.63 -0.26 - -
- - - 1.34 -1.93 -0.5 - 0.34 -1.51 0.3 0.32 0.04 -1.74 - - - - -0.99 - - - 1.44 3.29 - 0.28 1.52
-1.34 - - -1.54 -1.15 - - -0.82 -2.58 - - - - -1.33 -0.45 -0.05 - -0.15 -0.88 -1.84 2.19 -2.02 3.49 0.67 0.37 0.38
-0.59 -0.7 -1.02 0.32 -0.65 -1.94 -0.05 -0.94 0.32 0.3 0.86 1.58 0.46 -0.55 -1.24 -0.32 -3.01 -0.68 -2.33 -1.93 0.24 -2.07 2.55 0.14 -2.59 -1.8
- -6.32 -5.23 - -6.27 -5.32 - -5.5 -4.46 -5.56 -4.76 -4.63 -6.06 -6.62 - -4.44 -2.62 -1.92 -1.74 -2.05 1.37 0.02 2.54 3.23 1.63 1.5
- -1.26 -0.84 - - - - - - - - - - - - - - -1.38 - - 3.01 - 3.94 -0.23 - -1.42
-1.45 -0.71 -2.31 -3.53 -4.22 -3.01 -4.27 - -2.69 -1.33 -1.3 -1.33 -5.12 -6.1 -0.7 - - -1.48 -5.52 -3.85 -0.74 0.79 2.76 3.0 1.11 1.49
- - - - - - - - - - - - - - - - - - - - - - 4.17 - - 3.0
0.42 0.38 -0.97 -2.92 -0.03 -0.76 -0.91 -0.39 -0.12 -0.9 0.15 1.1 0.86 -4.58 -2.08 -4.11 -2.89 -1.74 -1.49 -1.69 -0.27 - 2.81 1.53 -1.31 -0.38
-1.1 -0.21 -0.31 -0.5 -1.23 0.39 -1.05 -2.04 -1.25 0.56 -0.32 -1.01 -1.14 -0.09 -0.66 -0.67 -0.22 0.72 0.14 0.04 -0.48 -0.35 1.78 -0.39 1.6 0.55
-0.79 - -2.16 -3.32 -1.25 - -1.32 -0.82 -1.61 -3.36 -0.31 -1.6 -2.88 -2.44 -1.78 -3.39 -3.08 -2.17 -3.63 -1.97 3.11 - 3.48 -1.29 -1.23 -3.78
- - - - - 0.74 - - - - - - - - - - - 0.25 - - 3.34 - 3.7 - - -
- - - - - - - - 0.63 0.49 - - 1.02 1.7 - - - - - - 1.21 - 3.95 - - -
- - - - - - - - - - - - - - -0.14 - - - - - 2.36 -1.37 3.28 2.89 - 1.25
-3.3 - -2.99 -1.94 -0.68 -1.61 -2.2 -2.04 -0.96 -1.77 -0.12 0.01 - -0.34 -1.52 -2.32 -1.51 -0.88 -1.95 -2.08 2.03 - 2.82 2.34 0.21 0.33
0.42 -2.66 -1.53 1.02 0.72 -1.21 -1.74 -0.04 -0.52 -1.14 0.53 -0.17 -2.17 -4.44 -2.02 -0.18 -2.14 -0.09 -1.34 -3.07 1.04 -1.81 1.46 0.75 1.66 1.19
-2.21 -3.7 -2.16 -3.2 -1.09 -1.1 0.12 -0.47 -0.62 0.39 0.54 -1.06 -2.88 - -0.61 -3.39 -3.31 -0.8 0.78 - 0.67 -1.84 3.33 0.97 -0.2 -0.54
-1.35 - - -0.21 -1.85 -2.65 -0.81 -0.6 0.63 -0.67 0.06 -0.17 -2.76 -0.34 -1.21 -1.64 -2.69 -3.41 -3.01 - 1.93 -1.31 3.57 -0.35 - -
- -0.9 - -0.4 - - -0.03 -0.59 -0.49 - - - - - -0.56 - - 0.36 - -0.85 3.13 - 3.47 - - -
- - - -0.49 -0.71 0.25 0.76 -1.3 -1.47 1.67 0.77 - - -0.87 - - - 0.85 -0.87 -1.83 -0.19 - 2.88 0.6 -0.16 1.23
-0.33 -0.6 -0.4 0.74 0.05 -1.43 0.36 0.2 -3.12 -1.61 -0.35 -1.01 - -1.99 -3.19 0.26 -0.96 -0.72 -0.72 -3.49 -0.2 1.31 2.18 0.28 1.22 0.8
0.2 0.03 0.05 -0.2 -0.69 -0.39 -0.35 -1.56 -2.45 -0.67 -0.63 -0.89 1.26 -0.94 -1.08 -0.21 - 0.21 0.35 -1.66 1.57 - 2.33 0.03 -0.04 -1.12
- - - - - - - - - - - - - - - - - - - - 1.26 - 4.34 - - 1.74
- - -4.14 -4.29 -1.38 -3.28 -4.16 -0.47 1.3 1.16 1.44 0.31 - 0.35 -0.58 -2.28 -1.44 -3.53 -2.72 -1.24 0.24 -4.62 3.04 1.25 -2.2 -0.37
-0.13 -4.24 - 0.88 0.33 - -1.2 -0.36 -0.72 -0.58 0.45 -0.4 -2.05 -3.4 -3.91 -3.67 -2.65 -2.27 -3.17 -4.19 0.76 1.08 1.79 2.62 0.78 0.28
-1.51 -0.85 0.57 0.77 0.2 0.16 -0.64 -1.66 -0.82 -1.49 -0.86 -1.84 -2.11 0.17 -1.55 -1.0 -1.18 -0.75 -0.34 0.35 2.5 -2.03 1.91 -0.13 -1.46 -0.51
-4.38 -2.07 -3.25 -1.2 -0.47 -0.28 -0.03 -0.88 0.06 -0.26 0.16 -0.31 -4.14 -1.84 -0.74 0.42 -1.65 -0.82 -1.78 -2.18 1.14 0.04 2.71 1.54 0.66 -1.38
-0.84 -2.19 -0.54 -1.81 - - -1.76 -0.07 0.63 -0.88 1.01 0.33 -1.33 -1.42 -0.43 - - 0.12 -0.94 -2.09 -0.77 2.06 1.92 -0.16 1.39 1.15
0.26 0.11 -0.68 -0.51 -0.52 -0.65 -0.39 -0.57 -0.64 0.47 0.28 0.59 0.09 -3.05 -1.85 -1.54 -1.05 -1.29 -2.78 -1.83 0.35 -1.53 2.56 1.01 0.66 -0.63
-1.79 - - -3.99 -1.35 -2.51 -2.17 -2.95 -0.98 -3.12 0.06 -0.51 -2.09 -2.54 -1.9 -2.4 -1.97 -1.74 -2.03 -1.81 1.36 -0.85 2.91 2.42 0.92 1.32
-2.39 -4.23 -4.48 -1.11 -2.35 -2.4 -2.12 -1.49 -2.14 -0.28 -0.34 -0.68 -1.45 -2.19 -0.57 -1.41 -2.69 -0.08 0.53 -1.06 1.15 -1.6 2.96 1.88 0.34 0.92
-1.59 - - - - -1.68 - - - - - - - -2.17 - - - 0.15 -0.12 2.24 2.74 - 3.27 0.9 -2.26 -
-0.06 -0.92 -2.83 -0.9 -0.3 0.15 -0.98 0.03 -0.22 -0.11 0.25 0.2 -1.67 -1.64 -3.59 -1.47 -0.86 -0.41 -2.77 -1.75 0.62 -0.79 2.23 2.01 0.32 0.43
-0.94 0.06 -0.16 0.16 - -2.47 -0.44 0.06 -2.43 -2.53 -0.48 -2.39 -2.59 -1.84 -2.57 -2.5 -0.27 -0.46 -2.83 -2.57 0.22 -1.48 3.45 1.39 -0.54 -0.42
- -1.41 -0.62 -2.41 0.14 -2.11 0.11 -0.73 -2.32 -0.84 -1.39 -2.27 -1.93 -0.43 -0.16 -1.42 0.55 0.33 0.11 -1.56 1.42 -0.1 2.6 -0.07 1.07 0.34
0.32 -0.8 -0.9 -0.92 -3.42 - -2.31 -0.34 -0.31 -0.1 0.56 -0.64 -1.15 - - -3.34 -3.35 -0.98 -0.93 -2.01 -1.72 -1.64 3.25 1.81 1.06 -1.05
-0.37 - -0.18 - -1.4 -0.17 - -1.28 -1.18 -1.35 - -1.19 -1.41 -1.89 - - - -0.97 -1.66 -0.09 0.49 0.96 3.47 - 0.36 1.71
-1.79 - - - - - -1.37 - -1.46 -2.6 -0.53 -0.39 -2.05 -1.33 -1.03 -2.34 - -0.01 0.2 -1.07 1.97 -0.36 3.17 1.48 0.45 0.61
-1.31 - -4.0 -1.4 -1.19 -1.15 -0.86 -0.98 0.18 -0.76 0.14 -0.45 -2.16 -1.42 -1.17 -1.18 -2.91 -0.32 -1.2 -3.23 1.52 1.0 2.55 1.46 1.18 -0.08

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.