- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone | Immature male cones | Cambium and expanding xylem | Cambium | Expanding xylem | Expanding and mature xylem | Maturing xylem | Wood | Bark | Bark, healthy | S1 xylem tracheids | S1 whole sections | S2 ray cells | S2 xylem tracheids | S2 whole sections | Dead late wood | Phloem and cambium | Dear early and late wood | Bark, root and butt rot | Vegetative shoots - needles | Vegetative shoots - stem | Vegetative shoots | Girdled twig - stem | Dried twig - needles | Girdled twig - needles | Needles | Needles - dawn | Needles - later afternoon | Needles - midday | Needles - night | Light, 1 hour | Light, 3 hours | Light, 5 hours | Light, 7 hours | Light, 9 hours | Light, 13 hours | Light, 15 hours | Darkness, 1 hour | Darkness, 3 hours | Darkness, 5 hours | Darkness, 7 hours | Darkness, 11 hours | Vegetative buds | Female buds | Male buds | Buds | Pineapple galls | Somatic germinants - abnormal type | Somatic germinants - normal type | Cell culture - H20 - 5 days | Cell culture - KI added - 5 days | Cell culture - KI added - 20 days | Cell culture - KI removed - 4 days | Cell culture - KI removed - 12 days | Cell culture - solid medium | Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| -2.22 | -2.92 | - | - | - | - | - | -0.95 | -1.44 | -1.93 | - | - | - | - | -4.92 | -3.02 | - | - | -3.0 | -3.95 | 2.44 | -1.74 | -1.13 | - | - | -3.96 | - | - | - | - | 0.63 | 1.24 | 0.97 | 1.22 | 1.5 | 1.11 | 1.25 | 0.19 | 0.51 | 0.51 | 0.15 | 1.48 | 2.41 | 3.1 | 2.52 | 0.58 | 1.37 | -1.46 | -1.95 | -4.79 | - | -4.69 | -4.88 | - | - | - | |
| 0.75 | -0.65 | -1.86 | -2.21 | -2.41 | -4.21 | - | 1.29 | -0.92 | -3.08 | - | -5.0 | -3.21 | - | -6.46 | - | - | -2.79 | -4.0 | 0.13 | 2.49 | -0.78 | 0.99 | -1.15 | 0.67 | 0.15 | 0.52 | -0.27 | -1.13 | -0.23 | -0.02 | -0.36 | -0.19 | 0.17 | 0.27 | 0.76 | 0.88 | -0.23 | 0.52 | 0.1 | -0.26 | 0.3 | 2.49 | 2.61 | 1.5 | 1.15 | 0.44 | -0.64 | -0.45 | - | - | - | - | -6.52 | - | - | |
| -1.65 | -1.43 | -3.54 | - | -4.39 | -3.87 | -0.76 | 0.13 | -1.01 | -1.58 | - | -4.41 | -0.77 | - | -3.17 | -1.28 | - | 1.18 | -2.68 | -3.61 | 0.84 | - | -1.97 | - | -2.14 | -1.87 | -1.56 | - | - | - | 1.55 | 1.5 | 1.62 | 1.41 | 1.5 | 1.08 | 1.54 | 0.64 | 0.94 | 1.43 | 1.26 | 1.72 | -1.09 | 2.88 | 2.06 | -2.41 | -1.14 | 0.32 | -0.26 | - | -4.6 | -4.67 | - | - | - | -6.09 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.