Heatmap: Cluster_44 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
- - - - - - - - - - - - - - - - - - 4.3 - - - - - - 3.07 - - - 1.99 - -
2.11 - - - - - - - - 2.84 - - - - - - - - - - - - - - - 4.36 - - - - - -
- - - - - - - - - - - - 1.15 - 1.25 - - 1.65 3.99 - - - - - - 3.07 - - - - - -
- - - - - - - - - - - - - - 2.43 - - - - - - - 1.89 - - 4.24 - - - - - 2.0
- - - - - - - -1.54 - - - - -0.94 - - - - 3.97 3.95 - - - - - - - - - - - - -
- - - - - - - - - - - - 3.18 - - - - 3.83 - - - - - - - - - - - - 3.14 -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - -
-0.46 -0.65 -0.22 0.1 0.19 -0.3 0.04 -0.24 -0.48 -0.34 -0.15 -0.87 0.34 2.49 2.93 -0.46 -3.52 2.25 -1.98 -2.45 - -3.36 -4.76 -3.92 -4.76 -1.8 -1.85 -1.97 -3.3 -3.22 -3.92 -3.59
-1.14 -0.76 -0.93 -0.48 -0.73 -0.76 -0.6 -0.86 -0.42 -0.39 -0.61 -0.8 0.34 1.8 2.58 0.8 -0.11 1.85 -2.05 -3.62 -5.2 -0.77 -0.59 0.26 -2.92 -4.26 -4.07 -3.49 0.06 0.59 -0.02 -0.14
0.05 -0.79 -0.35 -1.36 -2.77 -0.63 0.21 -1.38 -1.52 -0.57 -0.01 -0.53 -0.8 -1.49 0.38 -0.15 -0.69 2.12 3.29 - - - -0.05 -0.23 -0.01 -1.78 -1.14 - -0.13 -0.01 -1.73 -0.97
0.72 -1.87 - - - - - -1.92 - - - -0.98 -2.13 3.5 - -1.09 - - -0.58 - - - -2.32 - - 3.62 0.94 - -1.02 - 0.62 -2.49
-0.32 -0.62 -0.08 -1.01 -1.03 -0.48 -0.56 -0.99 -0.22 -0.53 -1.0 -0.73 -3.84 -4.22 - -1.7 0.7 1.96 2.7 -0.64 1.03 - -0.41 -1.05 -0.99 0.02 -0.6 -0.24 0.68 0.88 -0.71 -0.69
-2.62 - - - - - - -1.42 - - - - - -0.34 -1.84 0.77 - 3.76 3.73 - - - - - - -0.11 - - -1.07 - -1.11 -
- - - - - - - - - - - - - - - -5.12 - 4.32 3.42 - - - - - - - - - 0.43 - - -
-0.76 1.09 - - - 0.82 - 0.99 0.48 1.57 - -0.94 - - - - - - 1.08 - - - -0.96 1.39 - 2.71 - 1.52 1.13 1.46 - 0.07
-1.99 -0.79 -1.38 -1.84 -1.4 -0.91 -0.56 -1.5 -0.93 0.09 -0.68 -1.44 -2.32 -0.38 -0.28 -2.25 -2.56 3.85 2.68 -2.21 -2.55 - -3.44 -3.47 -2.79 -1.22 -0.82 -0.61 -2.72 -2.61 -3.24 -2.89
- - - - - - - -0.65 - - - -0.47 - - - - 0.81 3.87 1.27 - - - 2.03 1.3 - - 1.06 - 0.69 -0.3 -0.34 -
-3.25 -23.54 -4.73 -4.22 -3.55 -5.55 -3.79 -10.61 - - - -4.15 1.65 -4.49 -7.17 0.9 -6.42 4.68 -5.81 - - -5.62 -3.7 -3.34 -17.85 -2.7 - - -3.25 -2.21 -3.17 -3.26
-2.68 -1.49 -3.69 -3.64 -2.76 -3.05 -3.3 -3.4 -2.65 -2.84 -2.15 -1.97 -3.34 3.35 2.87 -0.56 - 2.57 -1.96 - - - -6.68 -4.17 -2.97 1.88 -0.45 -0.14 -6.56 -5.58 -6.61 -5.66
-4.98 -2.92 -2.5 -2.64 -2.05 -2.54 -2.49 -4.9 -5.8 -6.87 -6.07 -6.3 -7.6 -4.23 -4.47 -6.69 0.33 2.92 3.44 -7.38 -4.77 - 2.35 1.73 0.2 -6.28 -2.75 -1.96 -2.19 -1.0 -3.71 -2.38
- - - - - - - - - - - - - - - - - 3.97 4.03 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - 2.67 4.68 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - -
- - -1.74 -1.83 -1.26 0.03 -1.46 - - 0.42 - - - -0.4 0.58 - -1.13 1.83 3.81 - - - 0.78 - - -0.3 0.15 - -0.06 0.85 -0.3 -0.37
- 2.81 - - - - - - - - - - - - - - - - 2.9 - - - - - - 4.13 - - - - - -
-0.66 1.69 - - - 0.4 1.55 - - -0.34 1.75 - 0.65 - -0.23 - -1.7 3.27 2.64 - - - - - 0.18 - - - - - - -
- - - - - - - - 1.88 - - - - - - - - - - - - - - - - 3.32 - 4.2 - - - -
- - - - - - - - 1.88 - - - - - - - - - - - - - - - - 3.32 - 4.2 - - - -
- - - - - - - - - - - - 2.09 - - - - - 3.96 - - - - - - 3.05 - - - 1.97 - -
-0.75 -4.16 -2.03 -1.38 -1.08 -2.77 -0.48 -3.46 -2.99 -0.25 -1.38 -1.16 -3.38 3.07 -0.47 -1.23 -0.96 2.38 -0.42 - - 0.64 -2.07 -2.92 -0.79 1.24 1.58 1.52 -1.45 -2.65 -3.46 -4.53
- - - - - - - - - - - - - - - - 3.17 3.9 3.02 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - 3.17 3.9 3.02 - - - - - - - - - - - - -
-0.21 -1.04 -0.76 0.06 -0.47 -0.21 -0.21 -0.46 -0.13 -0.54 0.06 -0.3 -0.75 0.47 1.81 -1.44 -2.11 2.12 1.17 0.35 -2.69 -2.02 -1.71 -1.54 -1.01 -0.08 1.5 0.84 -2.72 -2.01 -1.35 -1.0
- - - - - - - -0.79 2.09 0.18 - - - - -0.24 - - 4.65 - - - - - - - - - - - - - -
-0.69 -1.08 -0.82 -0.26 -0.61 -0.29 -0.38 0.23 0.12 -0.73 0.2 -0.6 -3.02 -1.55 0.73 -2.45 -1.24 1.96 2.06 -1.16 -1.71 1.19 -1.59 -2.65 -0.3 0.83 0.89 1.15 -1.29 -1.35 -1.45 -1.1
- - - - - - - - - - - - - - - - - - - - - - - - - 4.14 - - 3.84 - - -
-1.13 -0.22 -1.33 -0.15 -0.54 0.0 -0.34 0.07 0.06 0.03 -0.36 -0.38 -2.18 0.7 -0.67 -1.46 -3.0 2.78 2.68 - - -3.58 -0.99 -1.03 0.71 -0.26 -0.18 -0.32 -3.61 -1.8 -2.57 -2.21
- - 0.12 - - - -0.02 - -0.58 0.46 - -1.62 - -1.02 - - - 3.41 3.54 - - - -1.5 -1.37 0.56 - 0.89 - -1.44 -1.45 - -
-3.79 - - -0.79 -2.76 -2.59 -2.76 - -2.04 -3.05 0.33 -0.55 0.53 -0.74 1.4 1.35 -1.03 2.64 3.34 - - - -2.67 -1.0 -0.59 -1.54 -1.43 -0.42 -0.07 -1.61 -2.65 -1.7
- - - - - - - - - - - - - - - - - 4.3 - - - - - - - - - - - - 3.61 -
- - - - - - - - - - - - - - - - - 3.7 3.44 - - - - - - 3.03 - - - - - -
-1.84 - - -2.74 0.09 -1.42 - -1.05 -4.06 -3.93 -0.4 -1.76 1.16 2.57 1.19 2.48 -1.75 -0.56 -0.98 - - - -1.69 -1.79 -0.19 2.62 -0.13 - -0.48 -0.58 -0.6 -1.52
2.64 - - - - - - - - - - - - - - - - - - - - - - - - 4.69 - - - - - -
-0.41 -1.28 - -0.28 1.27 0.45 0.43 -1.42 0.3 - -0.23 0.03 - - - -2.07 0.06 -2.36 -0.75 - - - -2.42 -2.24 - 1.49 0.66 3.54 -0.85 0.66 -1.4 -1.44
0.3 -0.11 - -0.84 -3.01 0.61 -0.24 -0.42 0.54 -1.34 0.39 0.11 -0.98 -0.91 -2.69 -0.91 -0.64 0.29 -0.37 - - - 0.29 0.3 0.12 2.58 -0.38 0.53 0.68 1.23 -0.72 0.21
-1.14 - - -0.54 - - - - - -0.65 -0.3 - -1.69 0.56 -15.8 -1.44 - 1.83 3.87 - - - 2.26 -1.72 - - 0.8 - - 0.16 -0.62 -1.12
- - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - -
- - - - - - - - - - - - - 2.53 - - - - - - - - - - - 4.71 - - - - - -
-3.63 -3.87 -6.03 -3.67 -1.19 -2.56 -1.68 -4.39 - -4.48 -6.51 -4.43 -8.78 - - - 0.5 3.08 4.0 - - - 1.35 -0.46 -0.36 - -5.72 -4.12 -1.99 -1.64 -4.83 -3.55
0.75 -0.5 - -0.38 -3.59 -1.6 0.46 -2.2 -0.7 0.28 -1.49 0.63 0.76 -3.45 -0.78 0.66 -0.69 2.71 2.12 - - - -1.37 -0.69 0.44 -1.76 -0.21 1.12 -1.07 -0.98 -1.33 -0.81
- - - - - - - - 2.86 - - - - - - - - - - - - - - - - 4.63 - - - - - -
-0.22 - 1.74 - - - - 0.74 - 1.06 1.19 - - 1.69 - - - 1.59 1.89 - - - - - - 3.57 - - - - - -
- - -0.42 - - -0.68 - - - - - - -1.05 -0.39 -1.0 -2.03 -1.12 2.61 3.9 - - - -2.05 0.12 - -1.05 1.11 0.07 -1.22 -0.17 - -0.26
- - - - - - - - - - - - - - 2.42 - - - - - - - - - - 4.23 - - 2.99 - - -
- - 0.97 - - - - - - 0.99 - - 1.64 - - - 1.59 2.33 2.46 - - - - - - 3.51 - - - - - -
- 1.66 - - - - - -17.85 - - 1.2 - - 0.59 - - - - - - - - - 0.36 - 3.94 - - 1.4 - 2.52 -
- - - - - - - - - - - - - 2.86 - - - - - - - - - - - 4.06 - - - 3.02 - -
- - - - - 2.26 - - - - - - - - - - 2.52 2.38 - - - - - - - 3.48 - - - - 2.37 -
- -2.37 - - - - - - - - - - -2.02 - -2.85 - - 4.81 0.66 - - - - - -0.1 -1.04 - - -1.2 - - -
- - - - - - 1.47 - 1.53 - - - - - - - - 3.44 3.28 - - - 1.48 - - - - - - 1.56 - -
- - - - - - 3.05 - - - - - - - - - - 3.94 - - 3.06 - - - - - - - - - - -
- - - - - - - - - - - - - - - - - 3.11 - - - - - - - 4.01 - - 2.87 - - -
- - - - - - - - - - - - - - - - - 3.12 3.95 - - - - - - - - - - 2.98 - -
-1.06 -0.79 -1.14 -1.12 -0.92 -1.59 1.72 -0.01 -0.47 -0.38 -0.85 -0.93 -0.95 -1.79 -2.08 -1.34 -1.47 2.38 0.57 -6.04 0.69 1.0 0.49 -0.04 1.34 -0.46 -0.01 -0.59 -0.93 -0.69 -0.54 0.09
- - - - - - - - - - - - - - - - - 1.77 4.84 - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - 3.98 - - - - - - - - - - 4.02 - -
- - - 0.19 - - - - - - - - 2.02 - - 0.44 - 3.58 3.75 - - - - - - - - - - - - -
0.39 -1.18 -2.46 - - - - -0.06 -1.52 - 0.44 0.08 -0.64 0.0 -2.18 0.39 -1.32 3.89 2.34 - - - - - -0.37 -0.47 - -0.2 -1.45 - - -2.5
- - - - - - - - - - - - - - - - - 1.89 - - - - - - - 3.47 - 4.04 - -0.3 -26.0 -26.25
-1.94 -1.8 - - -2.53 0.04 0.24 -0.33 -2.97 -0.91 -2.75 0.06 -0.91 - -2.29 -0.44 0.42 3.43 0.37 - - - 0.53 0.51 0.23 -1.58 -1.17 - -2.71 0.2 1.76 1.0
-3.1 - - - - - - -1.87 - -1.97 - - 0.22 - - 0.28 -1.39 3.95 3.24 - - - 0.08 -1.43 - - -0.16 - -1.67 -0.51 -1.56 -
- - - - - - - - - - - - - - - - - 1.84 4.83 - - - - - - - - - - - - -
-13.62 - - - - - - - 1.47 - - - 0.33 1.54 - -0.75 1.73 - - - - - 1.3 0.6 - 3.29 - - 1.98 1.4 -0.3 -
- - - - - 1.74 - - - - - - - - - - - - 1.72 - - - - - - 3.79 3.09 - 1.57 - - -
- - - - - - - - - - - - 1.23 - - - 1.16 4.11 1.67 - - - - - - - - 2.31 -0.03 0.1 - -
- - - - - - - - - - - - 3.26 - - - - 4.49 - - - - - - - - - - - - - -
-2.07 -0.0 1.52 0.83 - -2.52 - - -2.66 -2.83 -2.5 -1.12 -0.16 1.43 -3.27 - - -2.42 2.99 - - - -2.47 -2.68 - 3.57 -1.36 - -1.58 -2.59 - -
- - - - - - - - - - - - - - - - - 3.43 4.41 - - - - - - - - - - - - -
- 1.66 - -16.52 - - - -17.85 - - 1.2 - - 0.59 - - - - - - - - - 0.36 - 3.94 - - 1.4 - 2.52 -
- - - - - - - 0.35 - -0.28 1.11 -1.04 0.93 -0.29 1.79 1.65 - - 1.33 - - - - - - 3.49 1.8 - - -1.65 -1.27 -
0.2 - - - - - - -0.13 - -0.23 - 0.05 - - 1.18 - 1.94 - 2.22 - - - 0.96 -0.07 - 3.26 1.58 - - - - 0.89
-6.47 - -6.76 -7.47 -6.5 - -5.59 -4.33 -6.53 -5.63 - -4.7 -1.67 -4.96 -8.72 -1.2 -8.15 4.93 -7.58 - - - - -4.18 -2.39 -3.49 - -4.67 -6.03 -2.7 -4.9 -6.6
-1.42 -1.26 -1.21 -0.76 -0.22 -0.31 -0.66 -2.02 -2.5 -3.09 -3.16 -2.61 -8.31 -3.42 -3.15 -5.44 1.64 0.38 3.43 -8.48 -6.85 - 2.19 1.36 -0.04 -2.24 -0.73 -0.3 -0.73 -0.1 -2.53 -2.19
-4.01 - - -2.55 -0.85 - -1.67 -2.78 -1.71 - - -2.71 - - - - -1.61 3.15 4.22 - - - -1.73 - - - - -0.25 -0.07 -1.63 - -
-1.08 -0.82 0.16 -0.62 -0.42 -0.28 -0.33 -0.38 -0.04 0.13 -0.44 -0.46 -0.26 1.16 2.15 0.85 0.09 0.6 0.1 -6.52 -2.21 0.16 -0.77 -0.76 -2.06 -1.86 -1.05 -0.4 0.31 0.57 0.27 0.43
0.38 0.58 0.22 0.17 -0.02 -0.01 0.22 -0.47 -0.04 -0.02 -0.13 0.11 0.04 1.48 2.1 -0.64 0.13 0.61 -0.95 -5.95 -6.55 -4.57 -0.38 0.01 -6.39 -2.15 -1.33 -0.81 0.09 0.49 -0.3 -0.2
-1.18 -1.01 -1.14 -0.72 -1.26 -0.94 -0.75 -1.17 -0.99 -1.05 -1.24 -1.23 -3.85 2.18 2.98 -2.38 -0.72 2.71 -1.32 -5.38 -7.04 -3.58 -1.11 -0.38 -3.94 -1.75 -1.16 -1.53 0.07 0.21 -0.53 -0.94
- - - - - - - - - - -3.96 - -2.81 -2.8 - - - 4.9 -3.94 - 0.5 - - -3.9 - - - - -3.95 - -3.91 -2.39
- - - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - -
- - - - - - -2.19 - - - - - -1.8 - -2.7 - - 3.78 3.85 - - - - - - 0.59 - 0.23 -1.94 -1.93 - -
0.87 - - - - - - - - - - - - - - - - - 1.88 - - - - - - 4.73 - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.