Heatmap: Cluster_21 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
-0.16 -3.8 - -5.25 - 0.14 -0.31 1.54 0.04 - -1.4 1.57 -1.51 2.14 1.96 0.97 -2.1 0.39 - - - - -1.61 -1.58 -0.02 2.87 - - - - -0.52 -
-1.88 -1.85 -2.08 -4.12 -4.57 -1.39 -0.06 -1.32 -1.46 -2.28 -1.47 -1.37 -0.35 3.81 1.22 1.28 -0.99 0.02 -1.01 -3.05 -11.12 - 0.53 1.01 0.09 -5.01 -2.4 -2.08 -1.21 -1.14 -1.54 -2.9
- - - - - - - - - - - - - 3.67 - - - - 3.7 - - - - 2.63 - - - - - - - -
-2.79 -2.44 -5.15 -4.05 -3.58 -3.16 -4.63 -1.89 -3.78 -3.0 -2.79 -2.95 1.28 4.42 0.97 1.61 -7.65 -6.47 -4.23 - - - -6.34 -3.49 -0.98 -1.41 -1.14 -4.03 -4.87 -4.84 -4.68 -6.13
-0.79 -1.06 -1.58 -1.16 -1.25 -1.34 -1.18 -0.68 -0.76 -0.7 -0.66 -0.56 -1.9 3.39 -2.05 0.1 -0.71 -1.75 -1.86 1.07 1.41 -0.75 -1.34 -1.75 1.85 -1.28 -1.37 -1.92 -0.73 -0.71 -1.52 -2.12
-0.8 -0.81 -6.19 -3.52 -3.04 -1.27 -5.12 -1.34 -2.68 -2.2 -1.53 -1.97 0.11 3.87 -3.49 1.62 -4.41 - -0.31 - - - -0.85 0.45 1.75 0.99 -0.42 -4.75 -2.94 -3.07 -0.46 -3.89
-1.22 -9.67 -4.35 -1.88 -1.88 1.54 -2.52 1.44 - -0.67 1.22 -0.56 -0.71 2.98 -3.15 -0.57 - -4.39 -0.79 - - - -0.21 -0.49 1.75 2.13 -0.52 - -0.65 -2.15 -0.58 -3.31
-0.63 -0.59 -4.24 -2.84 -1.35 -2.0 -2.9 -1.03 -4.9 -2.46 -1.46 -1.73 -1.0 3.88 -0.85 0.59 -1.33 -0.98 0.15 - - - -0.39 -1.21 0.68 -0.86 -0.56 - 0.33 -0.97 1.55 -1.65
-0.87 -1.3 -0.95 -1.46 -1.46 -1.24 -2.53 -0.81 -1.52 -1.09 -0.83 -2.39 1.85 3.76 -1.09 1.04 -3.45 1.64 0.34 - -5.89 - -2.37 -0.57 -2.56 -1.04 -0.91 -3.74 -2.77 -1.75 -2.24 -2.82
- - - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - -
- 1.85 - - - - - - - 1.82 - - - 3.21 1.6 - - 2.04 - - - - - - - - 3.08 - - - - -
0.31 -1.59 1.35 -1.53 -0.67 -1.2 -0.55 0.23 0.43 -0.08 -1.87 0.14 -3.83 3.73 -2.43 0.35 -3.67 -2.73 0.1 - - - -2.84 -2.25 -2.44 1.27 -0.03 - -1.18 -2.85 -1.78 -4.27
-0.04 -0.78 -1.12 -1.23 -0.73 -1.25 -1.15 -0.57 -1.37 -0.94 -1.04 -0.98 0.49 3.02 0.39 1.28 -1.84 - 0.57 -9.48 -2.15 -7.4 0.29 0.89 -0.33 0.85 0.12 -0.56 -0.39 -0.7 0.14 -1.63
-0.24 -0.58 -1.38 -0.88 -3.04 -1.8 -2.05 -0.51 -2.13 -0.76 -0.1 -2.3 -2.54 3.27 -1.63 1.78 -3.58 -0.97 0.75 - - - -1.64 -1.81 -0.03 2.23 -0.1 -0.36 -0.14 -2.26 0.15 -2.52
-0.02 -0.21 -0.16 -0.36 -0.04 -0.19 -0.29 -0.23 -0.1 -0.08 0.06 0.03 -1.16 2.76 -1.56 0.31 -0.26 -0.82 -0.08 -2.65 -5.66 -3.66 -0.72 -0.95 -2.81 1.08 0.33 0.51 -0.22 -0.26 -0.06 -0.15
- - - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - - - -
-1.42 -0.57 -0.45 -1.78 -1.06 -2.21 -1.05 -1.62 -1.25 -4.15 -1.65 -1.02 -2.33 4.19 -3.57 0.87 -1.45 -3.34 0.84 - - - -4.66 -1.65 -0.04 - 0.12 -0.58 -1.63 -0.79 -1.64 -2.49
0.42 -0.63 0.27 - -1.38 0.51 0.2 0.38 -0.68 0.74 -1.0 -0.49 -0.14 3.43 -2.33 -0.28 -0.96 - -0.73 -4.22 - -1.59 -1.6 -0.87 - 0.5 -0.87 0.63 -0.33 -0.88 -0.11 -2.88
-1.01 -1.29 -1.7 -2.72 0.45 -1.0 -0.38 -0.4 -0.09 -1.86 -0.5 -1.31 0.45 3.21 -1.79 1.24 -1.59 1.36 0.36 - - - -1.27 -0.84 -1.39 -0.13 0.1 -0.65 0.32 -0.36 0.07 -1.24
-0.23 -0.89 -1.28 -0.86 -0.53 -1.02 -0.23 0.1 -0.85 0.1 -0.15 -0.44 -2.14 2.67 0.67 0.47 -1.26 -3.47 1.21 -1.4 -1.09 -3.9 -1.42 -0.6 -2.26 -0.06 0.29 0.18 -0.29 -0.22 1.18 0.56
-1.45 -1.15 -0.98 -0.59 -0.39 -0.79 -0.69 -0.18 -0.46 -0.66 -0.79 -1.16 -0.11 3.57 0.47 0.42 -2.35 -2.43 -0.84 -2.1 -0.22 -3.37 -1.56 -1.1 0.59 0.15 0.05 0.13 -1.15 -1.21 -1.31 -1.85
- - - - - - - - - - - - - 4.53 - - - 3.16 - - - - - - - - - - - - - -
-1.38 -1.04 -2.58 -1.24 -0.13 -1.61 -0.54 -1.43 -1.08 -2.04 -0.96 -1.65 -2.03 4.24 1.65 -2.71 - -4.31 -3.98 -3.37 - - -5.04 -5.05 0.57 -0.23 -0.15 -0.55 -4.96 -4.97 - -
-0.99 -1.46 -0.58 -0.43 -0.65 -1.25 -0.43 -0.32 -0.59 -0.6 -0.41 -0.21 1.06 1.89 -1.12 1.2 0.26 -0.28 1.24 - - -0.1 0.34 0.65 -2.05 -1.19 -1.21 0.17 0.24 0.49 0.55 0.23
- - - - - - - - - - - - 2.94 2.28 3.83 - - - - - - - - - - 2.38 - - - - - -
-0.6 -3.33 -2.51 -1.03 0.95 -1.6 -1.5 0.1 -1.22 -2.81 -1.58 -1.3 0.4 4.11 1.66 1.83 - - -2.66 - - - - - - - - - - - -3.71 -
- - - - - - - - 2.07 - - - 3.86 2.06 - - - 2.8 1.11 - - - - - - - - - - - - -
- - - - - - - - - - - - - 4.27 3.66 - - - - - - - - - - - - - - - - -
-0.75 -0.57 -0.24 0.16 0.07 -1.65 -0.58 -0.55 -0.64 -1.03 -0.61 -1.34 0.5 4.17 -0.4 -0.95 - - -3.9 -4.66 -3.52 - - - -0.01 0.04 -0.63 -2.55 -4.86 -4.87 - -4.96
-2.21 -1.37 - - - - - -0.04 0.08 -0.68 - - - 2.15 2.41 - -0.19 -0.6 -0.3 - - 1.24 - -1.34 1.5 2.04 1.1 0.92 -1.24 0.76 -0.29 -
0.07 -2.27 -4.15 -3.19 -2.12 -2.54 -2.33 -1.51 -3.01 -2.2 -1.88 -2.48 -0.5 3.61 -1.34 2.19 -1.99 0.72 1.41 - - -3.31 -2.21 -1.29 -0.64 -1.76 -1.65 -2.1 0.98 0.26 -0.28 -2.65
0.75 - - - - - - - - - - - - 2.45 0.26 1.14 - - 0.81 - - - - - - - 2.37 3.18 0.88 1.86 - -
-1.12 -0.73 -1.64 -2.4 -2.12 -1.16 -3.13 -0.51 -1.29 -1.29 -0.86 -1.17 -0.29 4.23 0.84 -0.02 -3.0 -6.35 -2.97 0.08 -3.34 - -1.74 -2.04 -0.56 -0.26 -0.5 -4.86 -2.93 -2.29 -3.81 -3.48
- - - - - - - - 2.73 - - - - 4.04 - - - - - - - - - - - - - - - 3.16 - -
-1.01 -1.14 -1.06 -0.54 -0.31 -0.01 -0.8 -0.2 -1.12 -0.7 -0.79 -1.25 0.38 2.36 -0.89 1.37 -0.84 -0.79 0.28 -2.3 -0.23 -2.15 -0.3 0.6 0.4 1.55 0.7 0.14 -0.89 -1.15 -0.57 -1.29
-3.88 -3.87 -5.98 - - -3.63 -4.85 -6.86 -3.84 -5.48 -2.67 -4.43 -0.42 4.69 0.77 0.83 -4.44 -6.28 -3.37 - - - -3.2 -3.65 -1.54 -4.52 -3.22 -3.0 -3.34 -3.26 -3.85 -3.4
-1.39 - -3.01 - - - - - - - - -3.11 -2.61 4.79 1.09 -0.2 - - -4.39 - - - - - -1.7 -12.27 -4.56 - - -4.61 -4.39 -
- - - - - - - - - - - - - 4.59 - - - - 2.99 - - - - - - - - - - - - -
- - - - - - - - - - - - 4.1 3.89 - - - - - - - - - - - - - - - - - -
-3.88 -3.87 -5.98 - - -3.63 -4.85 -6.86 -3.84 -5.48 -2.67 -4.43 -0.42 4.69 0.77 0.83 -4.44 -6.28 -3.37 - - - -3.2 -3.65 -1.54 -4.52 -3.22 -3.0 -3.34 -3.26 -3.85 -3.4
0.51 -0.01 -0.73 -1.17 -1.06 -1.51 -1.53 -1.49 -1.02 -0.92 -0.77 0.01 0.16 3.79 -0.59 0.3 -1.46 -1.15 -0.9 -6.65 - -7.89 -2.31 -1.63 1.11 0.08 -1.3 -2.13 -0.98 -1.06 -1.3 -1.43
0.5 -0.13 -0.26 -0.39 -0.35 -0.19 -0.15 -0.4 -0.35 -0.0 -0.18 -0.18 -0.38 3.08 0.76 1.23 -1.64 -1.3 -0.11 -4.02 -4.07 -4.5 -1.66 -0.87 -0.86 0.16 0.04 0.03 -1.16 -1.48 -1.16 -1.84
-0.37 -0.58 -0.61 -0.26 -1.17 -0.32 -0.32 -0.82 -0.42 -0.26 -0.36 -0.29 0.33 2.54 -0.29 0.69 -0.62 -0.39 -0.5 0.47 -0.27 -3.07 0.28 0.23 0.26 0.53 -0.59 -0.5 -0.23 -0.63 -0.21 -0.9
0.22 -0.48 -0.31 0.37 -0.85 0.46 -2.5 -0.9 0.61 -0.3 -0.67 -1.56 0.29 2.95 -0.23 0.59 -2.27 -1.72 -0.96 0.94 - - -0.33 -1.95 - 1.05 0.11 - 0.32 0.19 -1.66 -0.17
-1.63 - - 1.65 - - 0.77 - -0.19 - - - 1.03 2.88 3.13 1.14 - 2.25 - - - - - - - - - - - - - -0.19
1.27 - - - - - - - - - - - - 3.97 - - - - - - 2.0 - - - 3.31 - - - - - - -
-0.47 -0.66 -2.14 -2.15 -1.68 -1.85 -2.89 -1.43 -1.9 -2.29 -1.14 -1.5 0.7 3.42 -1.45 1.33 -3.02 - 0.32 - - - 0.14 1.12 0.44 1.43 1.06 -1.24 -1.58 -1.6 -0.73 -2.57
-0.39 -0.51 -2.75 -2.11 -0.8 -0.69 -1.27 0.1 -1.39 -1.22 -0.91 -0.94 0.05 3.45 -0.76 1.55 -2.18 -2.85 1.07 - - - -0.48 -0.43 -0.61 1.2 0.4 -0.93 -2.73 -2.79 -0.11 -2.26
- - - - - - - - - - - 1.71 - 3.82 2.82 - - - 2.93 - - - - - - - - - - - - -
-1.52 -1.4 -1.98 -2.06 -1.95 -2.25 -2.03 -1.07 -1.69 -0.6 -1.04 -0.7 0.36 3.26 0.05 0.46 -1.63 -2.54 -1.09 1.26 0.71 0.96 -1.03 -0.42 1.4 -0.11 -0.6 -1.51 -1.09 -0.92 -1.91 -2.11
-0.2 -1.05 -0.5 -0.6 -0.57 -0.37 -0.23 -0.02 -0.39 -0.22 0.02 -0.51 1.24 2.79 0.22 0.86 -0.8 0.06 -1.43 -3.08 -0.3 -1.1 -1.58 -1.35 -1.38 0.65 -0.02 0.24 -0.54 -0.91 -0.49 -1.91
- - - - - - - - - - - - 2.1 4.34 -0.71 2.55 - - -0.02 - - - - - - - - - - - - -
-1.97 -0.25 - 0.49 0.03 - - - 2.21 -0.42 - 0.43 - 4.03 0.05 - - - - - - - -1.14 -0.09 - 1.56 - - - - - -
-2.38 -2.35 - -1.84 - 0.23 - - -1.57 0.3 - -1.16 3.38 0.73 - 0.22 -1.95 2.76 2.46 - - - -2.67 -2.78 0.21 - - -0.78 -3.46 -2.04 - -
- - - - - - - - - - - - - 3.0 - - 2.94 - 3.12 - - - - - - - - - 1.95 - 1.9 -
-0.06 -0.14 -0.33 -0.24 -0.64 -0.49 -0.23 -0.39 -0.29 0.15 -0.07 -0.19 0.22 2.79 -0.06 0.79 -1.09 -2.3 -0.9 -1.1 0.16 -4.79 0.23 -0.1 -1.18 0.36 -0.49 -0.44 -0.34 -0.57 -0.14 -1.04
0.04 0.29 0.28 0.35 0.42 0.16 -0.28 0.58 -0.1 0.21 0.29 -0.52 0.27 3.42 -1.24 -0.13 -4.02 -0.45 -1.74 - - - -3.47 -2.18 - 0.57 0.8 -1.77 -3.95 -3.3 -3.53 -4.06
0.93 0.54 -1.63 -2.04 -1.95 -2.24 -2.3 -1.58 -2.11 -1.65 -1.78 -0.58 -0.87 3.42 -2.76 0.09 -2.72 0.13 0.59 -1.46 -1.56 - -1.28 0.28 0.85 -0.15 0.68 -1.44 -1.34 -1.59 0.62 0.08
0.02 -0.54 -1.56 -1.37 -1.14 -0.24 -1.64 -0.0 -1.3 -0.75 -0.8 -1.02 0.49 2.97 0.96 1.11 -1.69 - 0.42 -18.53 -5.55 - -0.13 0.3 -0.35 0.9 0.73 -0.62 -0.35 -0.68 0.09 -1.73
-0.57 -0.88 -2.42 1.32 -0.06 -0.21 0.14 0.04 -1.58 0.15 -0.19 0.12 -1.85 3.79 1.24 1.03 -5.23 -5.58 0.91 - - - -3.09 -4.78 -4.0 - - - -4.67 -6.26 -3.94 -6.33
-0.69 -0.61 -1.97 -1.79 -1.34 -1.52 -2.16 -1.44 -2.41 -2.09 -2.13 -2.02 -0.0 3.13 -3.35 0.74 -2.44 0.15 1.07 -8.01 -1.02 - -0.18 1.32 -0.3 0.06 1.38 -0.22 -1.02 -1.4 0.79 0.29
-3.75 -3.49 -6.11 -4.01 -3.58 -2.58 -3.74 -2.11 -4.54 -3.49 -3.27 -3.13 -2.44 4.56 1.81 0.29 -3.55 -3.38 -3.76 - -1.98 -2.58 -4.66 -3.32 -1.67 -3.36 -1.87 -1.7 -2.89 -2.57 -3.45 -2.75
-2.92 -3.0 -3.65 -3.15 -3.96 -3.11 -2.71 -1.8 -4.08 -2.4 -3.66 -2.05 -1.98 4.7 -1.15 1.33 - -6.45 -1.4 - - - -5.55 -6.43 -1.17 -4.5 -4.03 - -4.55 -3.57 -4.53 -
- - - - - - - - - - - - - 3.82 2.42 - - - - - -15.81 - - - - 3.65 - - - - - -
0.67 -0.53 0.08 -0.06 -0.22 0.38 0.13 -0.87 -0.04 -0.13 -0.21 -0.76 0.02 2.62 -0.76 0.73 -0.95 0.19 0.02 -1.54 -0.03 -4.1 -0.39 -0.21 -0.59 -0.3 -0.0 -0.53 -0.65 -0.06 -2.23 -1.09
0.14 -0.1 -0.5 -0.84 -0.24 -0.62 -0.39 -1.01 -0.35 -0.32 -0.42 -0.26 0.26 1.91 -0.19 1.38 0.52 0.76 0.4 -5.73 -2.19 -4.32 0.26 0.8 -0.02 -1.28 -1.33 -2.11 0.61 0.03 0.39 -0.39
-0.33 -0.72 -0.75 -0.54 -0.62 -0.43 -0.41 0.1 -0.23 -0.1 -0.1 -0.25 0.96 2.1 0.92 0.56 -1.24 -1.15 -0.44 -3.09 -2.48 -2.05 -0.57 -0.16 -0.52 1.05 -0.01 -0.32 -0.14 -0.3 0.72 0.37
-1.72 -2.41 -4.34 -2.96 -1.99 -2.77 -3.82 -2.24 -2.78 -1.69 -2.3 -2.23 -0.84 4.27 -2.92 0.87 -3.16 -2.45 2.08 - - -4.84 -3.07 -2.98 -0.79 0.16 -1.76 -3.79 -1.17 -1.95 -1.68 -3.13
-1.22 -0.86 -1.78 -1.39 -0.31 -1.12 -1.22 -0.39 -0.07 -1.26 -1.52 -2.2 2.06 3.69 1.5 1.71 - -4.18 0.45 - - -3.33 - -2.52 - -2.88 -2.08 -2.65 -3.4 -2.02 -4.87 -2.36

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.