Heatmap: Cluster_166 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Aerial tissue - Light - ZT1	Aerial tissue - Light - ZT3	Aerial tissue - Light - ZT5	Aerial tissue - Light - ZT7	Aerial tissue - Light - ZT9	Aerial tissue - Light - ZT11	Aerial tissue - Dark - ZT1	Aerial tissue - Dark - ZT3	Aerial tissue - Dark - ZT5	Aerial tissue - Dark - ZT7	Aerial tissue - Dark - ZT9	Aerial tissue - Dark - ZT11	Roots	Root elongation and differentiation zone	Root meristematic zone	Aerial roots and rhizophores	Shoot tips	Microphyll	Strobili	Shoot apical meristem - AC	Shoot apical meristem - Core	Shoot apical meristem - P1	Stem - Top	Stem - Bottom	Whole plant	Aerial tissue - Stress - Dark	Aerial tissue - Stress - High light	Aerial tissue - Stress - Cont	Aerial tissue - Stress - 37C 1h	Aerial tissue - Stress - 37C 3h	Aerial tissue - Stress - 4C 1h	Aerial tissue - Stress - 4C 3h
Smo100599	-0.15	-0.17	0.07	0.02	0.09	0.24	0.62	-0.18	-0.05	-0.03	-0.07	-0.23	0.36	0.5	1.79	0.55	0.05	0.05	0.32	-2.45	-4.39	-2.93	-0.23	-0.29	-2.74	-1.12	-0.87	-0.86	0.52	0.65	0.17	-0.12
Smo100915	-0.64	-0.18	-0.45	-0.05	-0.32	-0.04	-0.1	-0.24	-0.25	-0.45	-0.52	-0.5	0.26	0.85	1.74	0.33	-0.08	-0.21	0.15	-0.66	-0.18	-1.4	0.23	0.32	0.21	-0.15	0.21	0.08	-0.18	-0.22	-0.56	-0.46
Smo101548	-4.94	-4.62	-6.47	-5.23	-4.52	-4.67	-4.91	-5.83	-6.34	-5.22	-5.96	-5.55	0.71	1.65	3.05	0.8	0.62	0.01	1.06	-1.56	-2.21	-0.37	0.61	0.71	-2.55	-0.62	0.02	0.08	0.36	0.38	0.21	0.16
Smo103145	0.1	0.53	0.76	0.45	0.54	0.65	-0.07	-0.29	-0.3	-0.48	-0.22	-0.33	0.15	0.33	1.96	0.11	0.03	-0.31	-1.76	-6.26	-2.38	-1.23	0.52	0.47	-2.24	-0.44	0.17	0.48	-1.08	-0.72	-1.06	-1.03
Smo107911	-0.37	-0.29	-0.29	0.07	-0.07	-0.05	-0.24	-0.25	0.09	-0.31	-0.26	-0.43	0.46	0.7	1.04	0.69	0.14	0.03	0.62	-2.25	-1.59	-0.76	0.37	0.45	-0.49	-0.28	0.04	-0.11	0.16	-0.04	-0.23	-0.1
Smo112010	-0.84	-0.56	-0.29	-0.49	0.03	0.02	0.16	0.02	0.02	-0.36	-0.57	-0.69	0.41	0.34	1.66	0.86	-0.33	-0.3	1.16	-0.64	-2.7	-2.78	-0.05	0.46	-1.55	0.33	0.31	0.24	-0.23	0.26	-0.59	-0.9
Smo122460	-0.38	-0.16	-0.17	-0.06	-0.14	-0.12	0.25	-0.09	0.33	0.24	0.18	-0.08	0.86	0.29	1.52	0.64	-0.02	-0.58	-0.37	-2.39	-0.87	-0.79	0.58	0.66	-2.84	-0.48	-0.46	-0.2	-0.22	0.02	-0.48	-0.56
Smo133103	-0.19	0.22	0.56	0.39	0.63	1.0	0.48	0.04	0.04	-0.26	-0.63	-0.68	-0.24	0.28	2.07	0.47	0.05	-0.3	-0.38	-	-	-2.96	-0.27	-0.94	-2.85	-0.58	0.51	1.09	-0.41	-0.18	-2.68	-2.51
Smo134330	-0.19	0.13	0.1	0.05	-0.23	-0.35	-0.02	-0.44	-0.09	0.11	0.15	-0.26	-0.2	-0.17	1.7	-0.12	0.78	0.12	0.27	-7.59	-	-5.29	0.77	0.2	-6.42	-1.21	-0.9	-0.36	0.31	0.4	0.77	0.82
Smo145906	-0.41	-0.11	-0.12	0.08	0.56	0.13	0.24	-0.06	-0.06	-0.37	-0.42	-0.55	-0.25	0.59	1.39	0.28	0.02	-0.09	-0.07	-0.56	-1.07	-0.61	0.3	0.3	-0.43	-0.21	0.25	0.46	-0.13	-0.19	-0.61	-0.99
Smo156847	-0.37	-0.11	-0.13	-0.06	0.02	0.04	0.08	-0.37	-0.33	-0.36	-0.47	-0.47	0.43	0.84	1.68	0.33	0.21	-0.08	0.76	-0.02	-0.86	0.24	-0.34	-0.28	-0.73	-1.32	-0.6	-0.65	-0.1	0.08	-0.42	-0.41
Smo158820	-0.23	0.12	0.22	0.12	-0.04	0.32	0.0	-0.13	-0.15	-0.09	0.15	-0.28	0.33	0.49	1.41	0.5	-0.15	-0.3	0.3	-1.56	-3.08	-0.45	0.33	0.27	-0.62	-1.14	-0.65	-0.55	0.08	0.28	-0.37	0.13
Smo166994	-0.12	0.17	0.23	0.24	0.48	0.55	0.5	0.41	0.13	-0.1	-0.18	-0.4	-0.19	0.11	1.76	0.13	-0.21	-0.33	0.1	-0.76	-1.82	-0.27	-0.47	-0.31	-2.38	-0.22	0.34	0.12	-0.54	-0.44	-0.78	-0.94
Smo168384	-0.15	-0.25	-0.1	-0.02	0.19	0.04	0.06	0.07	0.06	-0.09	-0.12	-0.27	0.22	0.24	1.42	0.85	0.0	-0.22	0.52	-2.49	-4.13	-2.01	0.4	0.79	-1.15	0.05	-0.2	-0.14	0.01	0.08	-0.4	-0.72
Smo169717	-0.46	-0.16	-0.11	-0.18	0.11	0.16	0.03	-0.3	-0.55	-0.72	-0.86	-1.04	0.37	0.68	1.8	0.41	0.17	-0.39	0.6	-0.62	-1.46	-0.84	0.2	0.3	-0.62	-0.75	0.26	0.1	-0.1	-0.03	-0.16	-0.27
Smo179387	-0.48	-1.84	-0.91	-0.79	-0.83	-0.42	0.62	0.37	-1.72	0.28	0.23	0.06	1.3	0.05	3.04	-0.03	-1.74	-0.53	-3.8	-	-	-2.65	1.96	0.72	-1.78	-1.6	-1.57	-	-1.64	-1.38	-1.2	-1.17
Smo186937	-0.27	-0.24	-0.17	-0.07	0.24	0.52	0.18	-0.6	-0.46	-0.71	-1.04	-0.96	0.87	-0.29	2.05	1.27	0.57	0.42	0.57	0.18	-2.76	-0.63	-0.24	-0.02	-2.83	-2.66	-1.28	-1.1	0.13	0.23	-0.61	-1.35
Smo26102	-0.52	-0.39	-0.12	-0.0	0.14	0.46	0.33	0.16	0.2	0.14	-0.19	-0.28	0.25	0.31	1.36	0.54	0.02	-0.19	0.57	-1.64	-1.92	-1.85	0.19	0.33	-2.26	-0.12	-0.54	-0.49	0.27	0.19	-0.01	-0.21
Smo266777	-0.43	-0.47	-0.41	-0.23	-0.07	-0.13	-0.06	-0.09	-0.17	-0.14	-0.41	-0.47	0.14	0.81	1.82	0.17	-0.09	-0.45	0.1	-0.38	0.15	-1.49	-0.09	-0.08	-0.14	0.17	-0.1	-0.37	-0.11	-0.08	-0.09	-0.06
Smo268420	-0.07	0.02	0.02	0.0	0.0	0.17	-0.12	0.05	0.25	0.03	0.09	-0.19	0.44	0.07	1.52	0.17	-0.08	-0.39	-0.1	-1.25	-1.36	-0.38	0.59	0.79	-1.21	-0.44	-0.56	-0.51	-0.36	-0.28	-0.41	0.01
Smo26871	-0.01	0.06	-0.14	0.05	-0.66	0.12	-0.03	-0.16	0.11	0.13	-0.36	-0.31	0.71	0.95	1.42	0.8	-0.06	0.02	0.48	-5.55	-3.76	-2.29	0.12	0.29	-0.18	-0.65	-0.26	-0.83	0.31	0.08	-0.4	-0.43
Smo34445	-0.9	-0.45	-0.47	0.2	0.04	0.07	0.12	-0.16	-0.24	-0.68	-0.72	-0.92	0.57	0.89	0.77	1.08	0.33	0.19	1.04	-4.77	-3.02	-	0.01	0.14	0.05	-0.12	0.52	0.36	0.1	0.25	-0.59	-0.45
Smo36118	-0.1	0.11	0.31	0.18	0.49	0.51	0.4	0.32	-0.04	-0.29	-0.29	-0.56	0.07	0.15	2.02	0.28	0.16	0.2	0.32	-3.88	-5.18	-4.21	-0.08	0.08	-4.43	-1.0	-0.2	-0.32	-0.18	-0.1	-0.08	-0.2
Smo37399	-1.25	-0.53	-0.06	-0.37	-0.46	-0.31	-0.02	-0.06	-0.46	-0.58	-0.75	-0.93	0.57	0.11	2.14	0.83	0.17	0.29	0.85	-1.37	-1.06	-4.42	-0.02	0.07	-1.63	-0.67	0.35	0.16	0.11	0.29	-0.4	-0.14
Smo38168	-0.29	-0.17	-0.03	0.02	0.14	-0.0	0.35	0.22	0.16	0.22	-0.15	-0.29	-0.03	0.22	1.41	0.08	0.08	0.06	0.1	-1.09	-0.86	-6.19	0.13	-0.0	-0.4	-0.43	0.27	0.14	-0.06	-0.12	-0.26	0.07
Smo402152	0.31	0.4	0.52	0.28	0.16	0.47	-0.08	0.05	-0.02	0.1	0.03	-0.06	0.24	0.42	1.35	0.5	-0.24	-0.73	0.2	-2.97	-1.17	-1.53	-0.01	0.21	-1.1	-0.27	-0.02	0.33	-0.31	-0.23	-1.13	-1.05
Smo402415	-0.47	-0.23	-0.11	0.3	0.07	0.42	0.47	0.01	0.33	0.01	-0.48	-0.14	-1.75	-0.56	2.24	-1.29	0.26	-0.83	0.36	-0.19	0.53	0.01	-1.35	-1.44	-0.59	-0.47	0.57	0.27	-0.42	-0.34	-1.25	-1.62
Smo403695	-0.01	-1.72	0.03	0.42	-1.82	-0.25	-0.83	-0.44	-1.85	-1.41	-0.86	-1.42	1.54	0.21	2.97	1.87	-2.86	-2.96	2.03	-	-1.29	-	-1.96	-	0.64	-0.55	-1.26	-1.11	-3.28	-1.99	-3.52	-2.46
Smo404417	-0.26	-0.24	0.01	0.36	0.61	0.24	0.12	0.03	-0.53	-0.08	-0.31	-0.72	0.75	0.89	2.43	1.19	0.61	-0.99	1.09	-	-3.84	-	-1.88	-1.83	-	-2.13	-2.34	-2.36	-0.02	0.54	-0.66	-1.11
Smo404698	-0.22	0.07	1.4	0.89	0.5	0.8	0.69	-0.19	0.01	0.14	-0.86	-0.46	0.29	0.76	1.96	0.82	0.03	-1.08	-0.09	-	-	-	-0.3	-1.32	-	-1.93	-0.18	-0.59	-0.51	0.03	-1.5	-1.18
Smo405772	-0.22	-0.06	0.0	0.22	0.21	0.22	0.4	0.06	0.51	0.39	0.27	0.08	-0.57	-0.18	1.27	0.17	0.05	-0.12	0.18	-2.73	-0.71	-1.76	0.39	0.43	-1.64	-0.38	-0.85	-0.98	-0.15	0.16	0.13	0.23
Smo406144	-1.79	-0.29	-0.47	-0.43	-0.27	-0.52	-0.87	-1.2	-0.72	-0.47	-1.34	-1.71	1.41	-0.68	2.91	1.77	-1.1	-2.93	2.2	-2.85	-2.05	-	-2.59	-1.87	-0.83	-0.89	-0.1	0.65	-1.74	-1.24	-2.53	-2.52
Smo409559	-	-	-	-	-	-	-	-	-	-1.63	-	-	0.9	-1.19	3.22	2.74	0.48	0.11	2.69	-	-	-	-0.61	0.04	-	-	0.04	-	-0.52	-0.51	-1.51	-
Smo410234	-0.78	-1.14	-0.84	-0.74	-0.45	-0.33	-0.32	-0.38	-0.28	-0.55	-1.4	-0.99	1.04	0.61	2.22	0.55	-0.97	-1.0	1.6	-3.15	-2.31	-2.48	-1.11	-1.52	-0.83	1.18	1.04	1.51	-1.2	-1.05	-1.74	-1.64
Smo411604	-0.3	-0.2	-0.32	0.24	0.08	-0.02	-0.24	0.11	0.3	0.38	0.26	-0.07	1.01	-0.47	2.02	0.76	-1.47	-1.55	0.07	-7.26	-4.07	-	0.85	0.89	-2.35	0.49	-0.15	-0.17	-0.83	-0.74	-0.82	-0.76
Smo418143	-0.54	0.38	-1.25	-0.79	-0.82	0.49	0.71	-1.16	-0.94	-1.81	-0.47	-0.24	-0.96	0.02	2.82	0.53	0.2	0.49	1.74	-	-0.52	-0.13	-3.97	-	0.12	-1.51	-2.19	0.81	-0.71	-1.29	-1.17	-3.22
Smo442408	0.0	0.15	0.12	0.06	0.13	0.25	0.26	0.16	-0.07	0.03	-0.14	-0.18	-0.2	-0.15	1.17	0.13	-0.22	-0.3	0.21	-0.18	-0.2	-0.57	-0.35	-0.31	-0.6	0.28	0.19	0.24	-0.15	-0.0	-0.57	-0.59
Smo51300	-0.19	0.15	-0.0	0.22	-0.18	-0.0	-0.03	-0.05	-0.01	-0.14	0.01	-0.45	0.36	0.83	1.71	0.71	-0.15	-0.64	0.9	-5.94	-	-3.5	-0.03	-0.04	-2.52	-0.18	0.3	0.57	-0.02	0.22	-0.97	-0.92
Smo54787	0.05	0.06	0.13	0.13	-0.06	0.26	-0.01	-0.11	-0.2	0.08	-0.4	-0.26	0.32	0.85	1.41	0.71	0.18	0.35	0.6	-	-2.81	-	0.12	0.17	-1.32	-0.85	-0.68	-0.31	0.32	0.33	-0.34	-0.29
Smo64580	-1.58	-1.94	-1.09	-0.53	-0.26	-0.65	-0.33	-0.48	-0.61	-0.3	-0.72	-1.06	0.6	1.92	2.7	1.37	0.13	0.13	-0.11	-1.35	-3.02	0.42	-1.02	-1.06	-3.06	-0.09	-1.33	-1.12	-0.25	0.04	-1.67	-1.78
Smo66631	-0.95	-0.99	-0.32	-0.51	-0.03	-0.23	-0.41	-0.74	-0.75	-0.55	-0.66	-0.92	0.06	0.68	2.63	0.52	0.13	-0.11	-0.02	-3.95	-5.56	-3.39	1.09	1.56	-2.91	-1.22	-0.4	-0.1	-0.3	0.01	-0.94	-0.47
Smo68032	-0.42	-0.19	-0.67	-0.14	-0.24	-0.13	0.13	-0.78	-0.44	-0.39	-0.61	-0.54	-0.68	-2.13	2.52	-0.08	1.2	0.52	1.05	-2.2	-0.57	-5.56	-1.58	-1.68	-1.34	-2.71	-0.83	-0.97	0.25	0.36	0.84	0.83
Smo74385	-0.75	-0.11	0.55	-0.05	-1.41	-0.41	-0.49	-0.13	0.28	-0.48	-0.76	-0.45	0.09	-0.71	2.39	-0.0	-0.39	0.72	1.55	-3.93	-3.65	-1.35	-0.96	-0.2	0.19	-0.77	-0.09	0.52	-0.16	0.42	-1.85	-2.08
Smo74402	-0.75	-0.11	0.55	-0.05	-1.41	-0.41	-0.49	-0.13	0.28	-0.48	-0.76	-0.45	0.09	-0.71	2.39	-0.0	-0.39	0.72	1.55	-3.93	-3.65	-1.35	-0.96	-0.2	0.19	-0.77	-0.09	0.52	-0.16	0.42	-1.85	-2.08
Smo77579	-0.21	-0.34	0.01	0.03	0.07	0.41	0.33	0.18	0.5	0.15	-0.06	-0.38	-0.57	0.94	1.23	0.61	0.29	0.19	0.35	-4.44	-	-5.64	0.36	0.32	-2.95	-0.85	-0.09	-0.13	0.16	0.15	-0.24	-0.05
Smo78436	-0.1	0.4	-0.4	0.58	0.24	0.62	0.1	-0.27	-0.09	-0.89	-0.38	-0.03	-0.65	-0.16	2.09	-0.37	0.28	0.44	0.11	-4.74	-2.16	-1.75	-0.48	-0.34	0.31	-0.91	0.32	0.8	-0.05	0.13	-1.83	-1.81
Smo80061	-0.1	0.07	-0.09	0.18	0.27	0.34	0.1	0.28	0.05	-0.28	-0.19	-0.26	-0.07	0.46	1.5	0.27	-0.35	-0.54	0.64	-1.75	-2.17	-0.96	-0.23	-0.17	-0.4	0.15	0.25	-0.12	-0.32	-0.42	0.06	-0.19
Smo80985	0.06	0.54	0.52	0.45	0.65	0.41	-0.09	-0.41	-0.01	-0.17	-0.14	-0.56	-0.01	0.55	2.09	0.18	-0.05	-0.09	-1.67	-3.47	-2.95	0.19	0.61	0.62	-2.2	-1.04	-0.52	-0.44	-1.07	-0.72	-1.06	-1.14
Smo85231	-0.19	-0.15	-0.13	-0.08	0.04	-0.02	-0.05	-0.22	-0.07	-0.26	-0.05	-0.43	-0.19	0.71	1.65	0.55	0.11	-0.35	0.51	-1.29	-0.74	-1.54	0.41	0.32	-1.36	-0.45	0.15	0.34	0.05	0.14	-0.74	-1.09
Smo85819	-0.88	-0.15	-0.07	-0.43	0.67	0.4	-0.48	-1.22	0.16	0.06	-0.39	-0.73	1.09	-0.91	2.55	0.71	0.65	0.06	-0.28	-	-	-	-1.72	-1.25	-	-4.53	-1.91	0.15	0.05	0.4	0.61	0.72
Smo87845	-0.14	0.14	0.33	0.66	0.4	0.51	0.47	0.42	0.03	-0.32	0.04	-0.48	-2.62	-0.69	2.33	-1.42	-0.43	0.04	-0.35	-2.85	-0.46	0.64	-1.47	-2.06	-0.52	-0.79	0.81	0.68	-0.85	-0.81	-1.51	-2.03
Smo89329	-0.34	-0.45	-0.61	-0.16	-0.16	0.25	0.01	0.32	0.04	-0.07	-0.35	-0.61	-0.35	0.25	1.7	0.59	-0.22	-0.39	1.02	-1.64	-2.69	-2.23	-0.39	-0.22	-0.48	0.28	0.49	-0.06	-0.03	-0.27	0.32	0.18
Smo90583	-0.5	-0.12	0.12	0.25	0.95	1.05	0.79	0.22	0.2	0.1	-0.26	-0.54	-0.45	-1.4	2.09	-0.32	-0.07	-0.22	-0.2	-0.91	-2.08	-2.14	-0.76	-0.62	-3.84	-0.97	0.69	0.49	-0.2	0.17	-1.55	-1.21
Smo93135	-0.55	0.41	0.36	0.18	0.49	0.5	0.25	0.09	0.08	-0.09	-0.08	-0.47	-0.19	0.65	1.79	0.06	-0.04	-0.61	-0.15	-2.04	-0.19	-0.69	0.24	0.17	-0.83	-0.62	-0.5	-0.07	-0.15	-0.11	-1.25	-2.2
Smo93546	-0.74	-0.5	-0.05	-0.3	-0.02	-0.06	-0.06	-0.55	-0.35	-0.45	-0.19	-0.96	-0.07	0.44	1.93	0.2	0.62	0.74	0.33	-1.58	-1.31	-4.44	0.33	0.23	-0.69	-1.55	-0.29	-0.41	0.07	0.32	0.39	0.42
Smo94371	-0.55	-0.43	-0.38	-0.28	-0.08	-0.02	-0.05	-0.11	-0.29	-0.38	-0.59	-0.6	0.41	0.59	1.82	0.41	-0.02	-0.51	0.4	0.14	-0.25	-0.14	0.17	0.39	-0.36	-0.5	-0.47	-0.81	-0.22	-0.21	-0.22	-0.19
Smo96647	-0.01	-0.2	0.3	-0.07	0.09	-0.37	-0.01	-0.05	0.34	0.46	0.32	0.07	-0.41	0.23	2.08	1.06	0.0	-0.45	-0.78	-3.52	-5.75	-2.15	0.07	0.5	-3.69	-0.97	-0.6	-0.95	0.13	0.39	-0.16	-0.35

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.