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Gene | Aerial tissue - Light - ZT1 | Aerial tissue - Light - ZT3 | Aerial tissue - Light - ZT5 | Aerial tissue - Light - ZT7 | Aerial tissue - Light - ZT9 | Aerial tissue - Light - ZT11 | Aerial tissue - Dark - ZT1 | Aerial tissue - Dark - ZT3 | Aerial tissue - Dark - ZT5 | Aerial tissue - Dark - ZT7 | Aerial tissue - Dark - ZT9 | Aerial tissue - Dark - ZT11 | Roots | Root elongation and differentiation zone | Root meristematic zone | Aerial roots and rhizophores | Shoot tips | Microphyll | Strobili | Shoot apical meristem - AC | Shoot apical meristem - Core | Shoot apical meristem - P1 | Stem - Top | Stem - Bottom | Whole plant | Aerial tissue - Stress - Dark | Aerial tissue - Stress - High light | Aerial tissue - Stress - Cont | Aerial tissue - Stress - 37C 1h | Aerial tissue - Stress - 37C 3h | Aerial tissue - Stress - 4C 1h | Aerial tissue - Stress - 4C 3h |
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0.0 | 0.26 | 0.0 | 0.0 | 8.48 | 1.65 | 0.55 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.51 | 0.0 | 30.62 | 21.74 | 29.47 | 0.0 | 0.0 | 41.29 | 16.51 | 19.66 | 13.58 | 0.0 | 0.0 | 0.0 | 0.0 | |
51.54 | 49.05 | 40.3 | 48.78 | 41.35 | 58.03 | 57.56 | 51.24 | 69.63 | 68.7 | 58.98 | 59.46 | 67.41 | 47.83 | 52.93 | 95.9 | 53.35 | 71.3 | 62.03 | 131.76 | 83.45 | 129.12 | 76.56 | 68.65 | 216.78 | 44.33 | 35.76 | 51.75 | 67.79 | 67.57 | 36.29 | 38.5 | |
24.84 | 22.06 | 26.14 | 25.05 | 27.29 | 27.95 | 24.87 | 33.2 | 32.58 | 31.61 | 34.55 | 26.99 | 53.42 | 31.23 | 34.34 | 51.71 | 37.79 | 41.59 | 46.53 | 23.25 | 48.45 | 85.36 | 50.3 | 53.58 | 66.26 | 58.75 | 49.96 | 47.07 | 33.42 | 38.76 | 46.03 | 46.93 | |
17.43 | 26.15 | 22.53 | 36.8 | 41.83 | 51.73 | 38.95 | 39.23 | 34.31 | 22.38 | 21.58 | 25.28 | 23.34 | 29.07 | 35.99 | 30.17 | 31.16 | 24.86 | 35.68 | 80.34 | 113.19 | 108.95 | 43.35 | 42.49 | 155.79 | 109.26 | 114.59 | 117.54 | 28.4 | 30.07 | 25.28 | 20.3 | |
5.09 | 4.23 | 4.92 | 5.52 | 5.81 | 5.28 | 5.58 | 5.95 | 7.26 | 6.76 | 6.95 | 6.15 | 8.87 | 6.26 | 9.58 | 8.51 | 4.19 | 2.34 | 7.86 | 12.13 | 7.52 | 19.82 | 6.29 | 8.39 | 6.85 | 27.23 | 17.3 | 16.75 | 4.55 | 5.33 | 6.05 | 6.39 | |
7.37 | 6.91 | 6.93 | 10.03 | 11.83 | 10.45 | 17.88 | 14.59 | 15.51 | 14.37 | 15.14 | 13.48 | 41.93 | 19.31 | 19.29 | 48.64 | 15.97 | 35.47 | 69.53 | 43.77 | 116.17 | 65.67 | 18.47 | 23.94 | 199.08 | 134.26 | 57.37 | 44.95 | 35.47 | 42.17 | 78.69 | 95.17 | |
31.44 | 39.24 | 46.59 | 60.93 | 76.61 | 74.63 | 51.85 | 53.11 | 38.57 | 36.54 | 35.5 | 26.4 | 53.87 | 58.36 | 60.95 | 59.0 | 39.05 | 30.83 | 49.53 | 74.86 | 69.17 | 33.23 | 53.54 | 50.45 | 84.85 | 82.87 | 85.4 | 91.31 | 24.19 | 26.54 | 30.81 | 34.76 | |
93.32 | 107.02 | 104.55 | 119.26 | 124.34 | 117.61 | 123.98 | 136.28 | 113.41 | 124.95 | 110.8 | 112.53 | 152.55 | 135.44 | 138.64 | 179.37 | 95.66 | 83.93 | 167.63 | 131.85 | 179.5 | 147.13 | 144.19 | 161.56 | 184.5 | 300.76 | 276.59 | 271.78 | 116.37 | 114.68 | 93.49 | 95.3 | |
21.19 | 26.02 | 28.95 | 29.96 | 36.3 | 41.96 | 31.11 | 33.8 | 27.43 | 26.17 | 25.72 | 22.87 | 22.05 | 25.4 | 35.47 | 28.62 | 21.2 | 16.27 | 31.16 | 16.5 | 42.0 | 24.46 | 20.53 | 22.43 | 52.95 | 35.84 | 48.9 | 54.81 | 16.9 | 16.85 | 17.07 | 18.45 | |
60.98 | 57.83 | 53.48 | 59.1 | 60.82 | 64.13 | 74.47 | 82.61 | 84.72 | 81.08 | 75.92 | 65.54 | 41.63 | 41.9 | 40.61 | 49.04 | 53.89 | 47.11 | 49.51 | 50.19 | 114.59 | 89.69 | 47.27 | 46.56 | 153.55 | 105.7 | 98.91 | 84.39 | 52.32 | 55.47 | 48.91 | 65.7 | |
189.66 | 235.54 | 256.48 | 273.92 | 244.39 | 326.14 | 314.59 | 258.6 | 234.29 | 246.96 | 219.47 | 199.02 | 527.57 | 339.17 | 578.05 | 602.3 | 361.64 | 306.18 | 398.97 | 742.44 | 162.63 | 760.45 | 342.9 | 421.18 | 514.57 | 1601.76 | 939.24 | 1520.83 | 331.66 | 341.62 | 204.16 | 72.98 | |
43.48 | 42.22 | 56.24 | 49.27 | 60.57 | 51.92 | 55.77 | 66.74 | 69.97 | 58.74 | 65.12 | 61.3 | 107.62 | 77.25 | 100.97 | 95.29 | 57.52 | 60.26 | 74.06 | 112.03 | 243.44 | 208.75 | 59.7 | 72.29 | 166.89 | 259.82 | 183.3 | 153.35 | 63.27 | 63.66 | 78.04 | 80.62 | |
115.93 | 132.79 | 133.37 | 129.0 | 128.29 | 180.98 | 154.23 | 205.68 | 138.88 | 102.01 | 119.13 | 90.73 | 109.31 | 103.62 | 115.09 | 154.58 | 174.42 | 277.25 | 171.47 | 551.01 | 410.0 | 971.57 | 146.66 | 153.78 | 401.91 | 467.99 | 967.41 | 771.32 | 171.15 | 149.99 | 250.47 | 242.64 | |
0.67 | 0.69 | 1.73 | 0.44 | 1.04 | 0.59 | 1.32 | 1.06 | 0.8 | 1.95 | 0.92 | 1.5 | 1.5 | 3.32 | 2.83 | 1.43 | 1.8 | 1.09 | 1.64 | 0.0 | 1.0 | 0.79 | 1.3 | 1.33 | 4.0 | 5.77 | 7.54 | 6.0 | 1.37 | 1.96 | 1.82 | 1.74 | |
24.97 | 25.31 | 16.41 | 24.18 | 18.78 | 21.44 | 18.51 | 28.19 | 22.49 | 30.34 | 19.59 | 22.78 | 10.96 | 25.05 | 18.8 | 14.32 | 9.61 | 2.87 | 16.67 | 56.04 | 57.06 | 63.76 | 9.78 | 12.6 | 83.23 | 125.09 | 111.92 | 102.35 | 12.16 | 8.51 | 6.77 | 7.8 | |
2.46 | 3.08 | 3.21 | 3.92 | 4.19 | 4.68 | 3.9 | 3.81 | 3.75 | 3.2 | 2.74 | 2.3 | 3.16 | 4.69 | 4.45 | 4.08 | 1.84 | 2.13 | 4.14 | 0.56 | 6.84 | 13.31 | 2.67 | 2.89 | 7.03 | 5.67 | 9.05 | 7.03 | 1.61 | 1.69 | 1.55 | 1.89 | |
27.0 | 26.76 | 28.41 | 36.38 | 44.61 | 41.75 | 34.74 | 32.43 | 25.73 | 27.44 | 27.55 | 23.22 | 29.22 | 25.83 | 18.14 | 32.98 | 23.06 | 24.0 | 32.39 | 12.17 | 71.11 | 13.99 | 26.57 | 26.56 | 87.71 | 42.27 | 45.94 | 53.94 | 17.24 | 17.62 | 20.96 | 26.87 | |
22.79 | 20.38 | 19.09 | 24.64 | 27.09 | 26.52 | 27.21 | 26.13 | 29.49 | 24.4 | 23.46 | 23.9 | 16.2 | 18.61 | 46.35 | 22.07 | 14.06 | 15.27 | 19.7 | 48.28 | 67.05 | 42.57 | 22.54 | 27.64 | 76.25 | 57.43 | 66.67 | 54.74 | 16.83 | 17.57 | 13.82 | 13.18 | |
1.09 | 1.38 | 1.73 | 3.23 | 4.27 | 5.27 | 2.42 | 2.08 | 2.59 | 2.0 | 1.86 | 1.42 | 1.54 | 2.2 | 2.2 | 2.08 | 1.16 | 0.88 | 1.89 | 2.8 | 4.73 | 2.32 | 2.34 | 2.7 | 8.07 | 4.26 | 6.2 | 3.59 | 0.76 | 0.95 | 0.71 | 0.67 | |
33.03 | 30.35 | 24.34 | 25.8 | 24.16 | 22.61 | 29.12 | 29.69 | 32.32 | 35.0 | 29.63 | 30.21 | 18.14 | 21.29 | 25.69 | 17.58 | 12.28 | 6.15 | 20.96 | 42.71 | 46.09 | 48.94 | 20.0 | 21.98 | 78.36 | 59.34 | 58.32 | 53.2 | 15.92 | 15.89 | 64.62 | 37.38 | |
0.6 | 1.52 | 1.67 | 1.0 | 0.6 | 0.82 | 1.15 | 0.88 | 1.38 | 0.67 | 0.92 | 0.68 | 0.72 | 0.97 | 0.75 | 0.55 | 0.55 | 0.58 | 0.7 | 0.05 | 1.64 | 5.28 | 0.58 | 0.78 | 1.99 | 0.83 | 1.27 | 0.73 | 0.31 | 0.23 | 0.51 | 0.51 | |
12.35 | 12.03 | 13.69 | 13.81 | 12.89 | 10.98 | 16.93 | 18.35 | 16.39 | 23.63 | 17.0 | 15.61 | 12.92 | 20.33 | 47.76 | 17.72 | 7.0 | 9.05 | 9.88 | 19.61 | 24.01 | 38.99 | 8.67 | 9.28 | 3.68 | 122.31 | 15.69 | 17.21 | 5.81 | 5.64 | 10.25 | 10.16 | |
1.09 | 1.56 | 2.74 | 5.96 | 7.72 | 6.66 | 4.44 | 4.17 | 2.3 | 1.4 | 1.65 | 1.35 | 11.36 | 2.46 | 8.65 | 10.51 | 1.58 | 5.52 | 2.05 | 4.93 | 5.59 | 0.3 | 4.0 | 4.65 | 10.74 | 3.35 | 4.71 | 4.61 | 1.11 | 1.87 | 0.74 | 1.07 | |
0.91 | 0.17 | 0.19 | 0.35 | 1.09 | 1.37 | 0.84 | 1.47 | 1.28 | 2.01 | 1.17 | 0.84 | 0.47 | 0.73 | 0.86 | 0.78 | 1.55 | 1.45 | 2.57 | 6.38 | 3.51 | 6.89 | 0.69 | 0.89 | 11.08 | 3.15 | 3.12 | 4.15 | 2.15 | 2.61 | 1.62 | 1.24 | |
12.19 | 17.24 | 19.34 | 24.94 | 20.76 | 25.78 | 22.75 | 17.79 | 14.17 | 11.75 | 13.16 | 11.56 | 16.57 | 28.62 | 27.72 | 18.19 | 9.22 | 5.09 | 12.65 | 18.0 | 21.33 | 29.85 | 10.4 | 9.46 | 55.0 | 20.05 | 32.27 | 27.97 | 6.63 | 6.3 | 4.81 | 6.13 | |
1.16 | 0.0 | 0.0 | 0.0 | 0.55 | 0.1 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.06 | 0.25 | 0.0 | 0.0 | 0.56 | 0.83 | 0.0 | 0.06 | 8.06 | 12.51 | 0.0 | 0.0 | 0.3 | 4.23 | 4.69 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
30.97 | 34.72 | 35.75 | 33.64 | 32.44 | 38.53 | 34.25 | 36.87 | 34.59 | 34.82 | 33.58 | 27.36 | 19.88 | 21.28 | 35.93 | 24.18 | 22.06 | 20.32 | 26.8 | 43.51 | 64.77 | 56.3 | 25.07 | 26.93 | 110.93 | 83.99 | 80.41 | 69.39 | 18.98 | 21.13 | 37.37 | 31.36 | |
1.09 | 1.11 | 0.78 | 1.22 | 1.17 | 1.69 | 1.25 | 1.01 | 1.11 | 0.79 | 1.37 | 1.01 | 2.67 | 1.39 | 1.58 | 1.94 | 1.08 | 0.31 | 1.3 | 1.08 | 3.53 | 4.85 | 0.97 | 1.02 | 2.09 | 0.77 | 1.67 | 0.75 | 0.68 | 0.27 | 1.76 | 1.48 | |
2.99 | 4.15 | 2.32 | 3.4 | 5.2 | 4.08 | 3.06 | 6.33 | 3.81 | 3.86 | 4.77 | 3.35 | 4.34 | 0.54 | 2.74 | 5.24 | 4.07 | 0.88 | 13.93 | 5.12 | 8.72 | 22.4 | 6.57 | 9.18 | 16.35 | 24.37 | 11.76 | 15.38 | 5.02 | 6.19 | 5.48 | 6.1 | |
2.41 | 2.16 | 2.46 | 2.8 | 2.76 | 1.61 | 5.55 | 4.91 | 4.69 | 8.55 | 6.06 | 5.34 | 5.77 | 1.9 | 1.9 | 4.35 | 2.73 | 0.11 | 3.43 | 2.77 | 7.42 | 23.02 | 2.79 | 3.15 | 8.83 | 20.29 | 7.47 | 10.51 | 3.65 | 3.47 | 3.71 | 3.8 | |
35.63 | 49.88 | 63.12 | 60.02 | 60.92 | 69.28 | 43.42 | 35.8 | 29.17 | 28.3 | 21.76 | 23.89 | 44.21 | 42.28 | 61.99 | 46.5 | 36.72 | 32.48 | 41.52 | 42.02 | 37.47 | 73.09 | 45.35 | 42.74 | 77.53 | 46.24 | 61.7 | 67.67 | 24.02 | 23.17 | 18.69 | 20.81 | |
2.48 | 1.77 | 1.63 | 4.07 | 9.23 | 10.49 | 4.44 | 3.43 | 2.44 | 2.44 | 2.41 | 2.06 | 5.91 | 4.83 | 3.34 | 4.59 | 3.45 | 2.6 | 3.83 | 7.44 | 11.76 | 0.97 | 3.3 | 2.64 | 20.12 | 9.06 | 9.16 | 9.72 | 1.89 | 2.15 | 1.55 | 1.93 | |
30.37 | 29.15 | 23.37 | 28.51 | 25.34 | 18.21 | 21.86 | 26.71 | 34.21 | 28.04 | 27.95 | 27.31 | 31.58 | 30.3 | 14.54 | 24.49 | 13.03 | 22.65 | 20.17 | 26.14 | 58.01 | 61.43 | 12.87 | 18.46 | 50.32 | 172.91 | 65.41 | 53.55 | 13.78 | 13.25 | 19.71 | 33.15 | |
0.93 | 0.92 | 0.67 | 2.06 | 2.69 | 0.41 | 1.47 | 1.31 | 0.85 | 0.47 | 1.0 | 1.99 | 0.13 | 0.41 | 0.48 | 0.28 | 0.25 | 0.0 | 0.24 | 1.6 | 5.84 | 1.78 | 0.23 | 0.0 | 8.67 | 4.37 | 10.74 | 6.26 | 0.0 | 0.12 | 0.62 | 0.24 | |
9.46 | 12.71 | 15.95 | 13.48 | 15.68 | 18.77 | 16.6 | 12.05 | 10.04 | 9.52 | 9.25 | 7.49 | 16.2 | 12.2 | 20.29 | 10.02 | 8.96 | 10.64 | 11.65 | 11.16 | 8.58 | 8.7 | 15.58 | 17.89 | 31.01 | 8.4 | 15.79 | 14.5 | 6.54 | 7.77 | 5.04 | 5.1 | |
0.35 | 0.29 | 0.0 | 0.21 | 0.34 | 0.38 | 0.38 | 0.53 | 0.78 | 0.43 | 0.2 | 0.35 | 0.11 | 3.79 | 1.95 | 0.19 | 0.07 | 0.3 | 0.33 | 8.88 | 8.6 | 3.67 | 0.21 | 0.37 | 19.04 | 9.69 | 6.76 | 8.2 | 0.19 | 0.27 | 0.33 | 0.16 | |
0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.06 | 0.0 | 0.0 | 0.05 | 0.1 | 0.0 | 0.05 | 0.16 | 0.0 | 0.11 | 0.08 | 0.0 | 0.44 | 1.47 | 2.9 | 0.0 | 0.0 | 0.23 | 1.2 | 2.53 | 1.8 | 0.0 | 0.0 | 0.0 | 0.0 | |
13.51 | 14.52 | 17.85 | 17.03 | 15.08 | 17.77 | 17.97 | 17.48 | 15.55 | 15.71 | 14.35 | 16.0 | 8.82 | 13.89 | 16.92 | 9.2 | 5.09 | 2.74 | 7.78 | 18.58 | 40.62 | 12.95 | 7.32 | 9.05 | 51.82 | 31.9 | 18.78 | 22.52 | 5.78 | 6.86 | 6.54 | 7.37 | |
0.35 | 0.1 | 0.07 | 0.08 | 0.28 | 0.1 | 0.17 | 0.13 | 0.47 | 0.09 | 0.22 | 0.02 | 0.27 | 2.13 | 2.15 | 0.67 | 0.2 | 0.07 | 0.27 | 1.9 | 3.25 | 2.09 | 0.18 | 0.21 | 6.52 | 6.66 | 7.74 | 8.11 | 0.29 | 0.22 | 0.13 | 0.1 | |
14.73 | 11.12 | 12.59 | 11.34 | 15.08 | 13.57 | 12.43 | 14.45 | 15.98 | 13.35 | 16.09 | 13.37 | 15.41 | 12.03 | 10.83 | 18.49 | 11.91 | 8.45 | 19.35 | 40.73 | 23.76 | 39.67 | 12.92 | 15.16 | 20.2 | 33.63 | 22.35 | 23.37 | 12.56 | 13.69 | 16.1 | 16.88 | |
39.51 | 30.05 | 27.71 | 33.93 | 41.55 | 31.0 | 35.49 | 40.8 | 47.73 | 48.3 | 48.2 | 45.9 | 60.37 | 27.25 | 25.07 | 56.5 | 31.56 | 23.09 | 85.44 | 96.3 | 99.97 | 126.95 | 41.07 | 74.58 | 77.86 | 138.63 | 112.69 | 80.89 | 32.66 | 36.44 | 55.01 | 89.09 | |
10.74 | 9.38 | 8.33 | 8.79 | 8.49 | 6.94 | 8.21 | 10.69 | 14.19 | 15.23 | 17.48 | 15.47 | 27.53 | 4.39 | 2.01 | 21.47 | 9.84 | 6.9 | 22.32 | 25.56 | 38.18 | 10.25 | 18.99 | 20.35 | 76.92 | 62.07 | 9.29 | 7.75 | 13.19 | 12.69 | 24.29 | 33.92 | |
14.1 | 14.46 | 3.98 | 9.25 | 8.82 | 10.58 | 10.87 | 12.39 | 24.09 | 30.69 | 21.4 | 26.24 | 56.95 | 21.51 | 22.33 | 43.57 | 17.26 | 25.6 | 30.21 | 17.1 | 119.63 | 114.68 | 26.8 | 33.45 | 171.79 | 142.34 | 86.62 | 42.18 | 23.95 | 28.68 | 28.44 | 45.06 | |
14.93 | 9.99 | 10.48 | 12.47 | 12.97 | 11.84 | 11.72 | 14.88 | 14.08 | 16.19 | 21.4 | 13.93 | 13.88 | 5.79 | 13.67 | 17.22 | 9.52 | 11.85 | 19.89 | 17.12 | 34.18 | 42.04 | 15.36 | 19.74 | 43.06 | 68.46 | 39.88 | 37.19 | 12.04 | 11.85 | 13.68 | 17.64 | |
39.41 | 35.81 | 30.13 | 37.89 | 35.6 | 43.0 | 34.84 | 42.84 | 38.48 | 42.42 | 40.01 | 34.17 | 26.92 | 24.14 | 36.63 | 34.21 | 38.59 | 16.52 | 37.34 | 30.39 | 51.82 | 40.23 | 31.4 | 34.8 | 55.56 | 55.01 | 60.0 | 59.2 | 34.33 | 34.56 | 47.57 | 42.18 | |
0.0 | 0.38 | 0.47 | 0.07 | 0.0 | 3.25 | 0.4 | 0.22 | 0.25 | 0.0 | 0.2 | 0.0 | 1.88 | 1.33 | 3.04 | 1.42 | 1.15 | 0.3 | 2.38 | 0.0 | 9.84 | 7.51 | 1.45 | 0.92 | 18.25 | 15.5 | 17.85 | 15.69 | 2.05 | 1.7 | 0.21 | 0.57 | |
80.03 | 55.77 | 48.3 | 49.85 | 41.53 | 52.74 | 42.48 | 48.19 | 57.89 | 63.53 | 73.98 | 77.45 | 48.51 | 51.29 | 54.4 | 54.75 | 38.8 | 42.24 | 82.52 | 59.69 | 101.59 | 99.46 | 46.47 | 50.25 | 154.37 | 145.78 | 89.57 | 75.35 | 48.07 | 47.35 | 120.22 | 117.26 | |
16.55 | 22.45 | 24.21 | 32.21 | 43.0 | 46.42 | 45.6 | 43.78 | 31.65 | 22.66 | 21.05 | 19.45 | 24.24 | 15.32 | 45.65 | 27.26 | 19.56 | 9.4 | 29.05 | 29.01 | 32.5 | 78.05 | 21.39 | 21.81 | 80.59 | 42.3 | 47.37 | 38.92 | 17.51 | 21.15 | 15.48 | 11.94 |
Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)