Gb_20613

Description : ligand-gated cation channel (GLR)

Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0000436 (LandPlants) Phylogenetic Tree(s): OG_05_0000436_tree ,
OG_06_0000332 (SeedPlants) Phylogenetic Tree(s): OG_06_0000332_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_20613
Cluster	HCCA: Cluster_128

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00140120	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
AMTR_s00019p00178690	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
AMTR_s00019p00180640	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.02	Archaeplastida
AMTR_s00019p00180760	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
AMTR_s00019p00182440	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.04	Archaeplastida
AMTR_s00019p00182630	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
AMTR_s00019p00184790	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.02	Archaeplastida
AMTR_s00023p00244390	evm_27.TU.AmTr_v1...	Solute transport.channels.GLR ligand-gated cation channel	0.04	Archaeplastida
AT2G24710	GLR2.3, ATGLR2.3	glutamate receptor 2.3	0.02	Archaeplastida
AT2G24720	GLR2.2, ATGLR2.2	glutamate receptor 2.2	0.05	Archaeplastida
AT2G29100	ATGLR2.9, GLR2.9	glutamate receptor 2.9	0.03	Archaeplastida
AT2G29120	GLR2.7, ATGLR2.7	glutamate receptor 2.7	0.03	Archaeplastida
AT3G04110	ATGLR1.1, GLR1.1, GLR1	glutamate receptor 1.1	0.03	Archaeplastida
AT4G31710	GLR2.4, ATGLR2.4	glutamate receptor 2.4	0.03	Archaeplastida
AT5G11180	ATGLR2.6, GLR2.6	glutamate receptor 2.6	0.03	Archaeplastida
AT5G11210	GLR2.5, ATGLR2.5	glutamate receptor 2.5	0.02	Archaeplastida
AT5G27100	GLR2.1, ATGLR2.1	glutamate receptor 2.1	0.02	Archaeplastida
AT5G48400	ATGLR1.2, GLR1.2	Glutamate receptor family protein	0.04	Archaeplastida
AT5G48410	ATGLR1.3, GLR1.3	glutamate receptor 1.3	0.03	Archaeplastida
GSVIVT01014244001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.02	Archaeplastida
GSVIVT01029195001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
GSVIVT01033129001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
GSVIVT01033142001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.03	Archaeplastida
GSVIVT01033150001	No alias	Solute transport.channels.GLR ligand-gated cation channel	0.04	Archaeplastida
Gb_16129	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Gb_28362	No alias	ligand-gated cation channel (GLR)	0.06	Archaeplastida
Gb_28364	No alias	ligand-gated cation channel (GLR)	0.05	Archaeplastida
LOC_Os06g09090.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
LOC_Os07g01310.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
MA_10429132g0010	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
MA_32301g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_339780g0010	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
MA_46902g0010	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
MA_6222576g0010	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
MA_88153g0010	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
MA_958834g0010	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Solyc02g077290.2.1	No alias	ligand-gated cation channel (GLR)	0.05	Archaeplastida
Solyc04g078860.4.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Solyc05g045650.4.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Solyc06g063180.3.1	No alias	ligand-gated cation channel (GLR)	0.05	Archaeplastida
Solyc06g063190.3.1	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Solyc06g063200.2.1	No alias	ligand-gated cation channel (GLR)	0.03	Archaeplastida
Solyc06g063210.3.1	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Solyc08g006500.4.1	No alias	ligand-gated cation channel (GLR)	0.04	Archaeplastida
Zm00001e013023_P001	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida
Zm00001e023728_P001	No alias	ligand-gated cation channel (GLR)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	IEA	Interproscan
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004420	hydroxymethylglutaryl-CoA reductase (NADPH) activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
BP	GO:0015936	coenzyme A metabolic process	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001638	Solute-binding_3/MltF_N	493	816
IPR001320	Iontro_rcpt	817	846
IPR001828	ANF_lig-bd_rcpt	60	411

External Links

No external refs found!

Gb_20613

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation