Description : Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia (sp|q9leb3|rbp47_nicpl : 142.0)
Gene families : OG0000444 (Archaeplastida) Phylogenetic Tree(s): OG0000444_tree ,
OG_05_0011301 (LandPlants) Phylogenetic Tree(s): OG_05_0011301_tree ,
OG_06_0011217 (SeedPlants) Phylogenetic Tree(s): OG_06_0011217_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Gb_20979 | |
Cluster | HCCA: Cluster_131 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00062p00161920 | evm_27.TU.AmTr_v1... | Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
AT5G54900 | ATRBP45A, RBP45A | RNA-binding protein 45A | 0.06 | Archaeplastida | |
MA_10430323g0010 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.03 | Archaeplastida | |
MA_10433660g0010 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.02 | Archaeplastida | |
Mp8g07840.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.02 | Archaeplastida | |
Pp3c4_13300V3.1 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.05 | Archaeplastida | |
Smo80061 | No alias | Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia | 0.04 | Archaeplastida | |
Solyc02g080420.4.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.03 | Archaeplastida | |
Solyc10g050860.3.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
CC | GO:0000502 | proteasome complex | IEP | Neighborhood |
MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
MF | GO:0005525 | GTP binding | IEP | Neighborhood |
CC | GO:0005575 | cellular_component | IEP | Neighborhood |
CC | GO:0005730 | nucleolus | IEP | Neighborhood |
BP | GO:0006066 | alcohol metabolic process | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0009894 | regulation of catabolic process | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
BP | GO:0016311 | dephosphorylation | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
BP | GO:0019751 | polyol metabolic process | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
CC | GO:0030684 | preribosome | IEP | Neighborhood |
CC | GO:0032040 | small-subunit processome | IEP | Neighborhood |
MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
BP | GO:0042176 | regulation of protein catabolic process | IEP | Neighborhood |
BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0043647 | inositol phosphate metabolic process | IEP | Neighborhood |
BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
BP | GO:0044282 | small molecule catabolic process | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0046164 | alcohol catabolic process | IEP | Neighborhood |
BP | GO:0046174 | polyol catabolic process | IEP | Neighborhood |
BP | GO:0046838 | phosphorylated carbohydrate dephosphorylation | IEP | Neighborhood |
BP | GO:0046855 | inositol phosphate dephosphorylation | IEP | Neighborhood |
BP | GO:0051246 | regulation of protein metabolic process | IEP | Neighborhood |
BP | GO:0071545 | inositol phosphate catabolic process | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Neighborhood |
BP | GO:1901616 | organic hydroxy compound catabolic process | IEP | Neighborhood |
CC | GO:1905368 | peptidase complex | IEP | Neighborhood |
CC | GO:1905369 | endopeptidase complex | IEP | Neighborhood |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 33 | 97 |
No external refs found! |