Coexpression cluster: Cluster_131 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 16.4% (31/189) 2.33 0.0 0.0
GO:0042254 ribosome biogenesis 2.12% (4/189) 6.19 0.0 1.1e-05
GO:0022613 ribonucleoprotein complex biogenesis 2.12% (4/189) 6.19 0.0 1.1e-05
GO:0090304 nucleic acid metabolic process 7.94% (15/189) 2.38 0.0 1.1e-05
GO:1901363 heterocyclic compound binding 22.22% (42/189) 1.23 0.0 1.3e-05
GO:0097159 organic cyclic compound binding 22.22% (42/189) 1.23 0.0 1.3e-05
GO:0044424 intracellular part 9.52% (18/189) 2.14 0.0 1.4e-05
GO:0044085 cellular component biogenesis 2.12% (4/189) 5.87 1e-06 1.9e-05
GO:0044464 cell part 9.52% (18/189) 2.04 0.0 1.9e-05
GO:0016070 RNA metabolic process 5.29% (10/189) 2.8 2e-06 6.6e-05
GO:0034641 cellular nitrogen compound metabolic process 9.52% (18/189) 1.87 3e-06 7.3e-05
GO:0005488 binding 30.16% (57/189) 0.83 6e-06 0.000133
GO:0006139 nucleobase-containing compound metabolic process 7.94% (15/189) 2.02 5e-06 0.000141
GO:0046483 heterocycle metabolic process 7.94% (15/189) 1.91 1.3e-05 0.000296
GO:0006725 cellular aromatic compound metabolic process 7.94% (15/189) 1.88 1.7e-05 0.000346
GO:1901360 organic cyclic compound metabolic process 7.94% (15/189) 1.85 2.2e-05 0.000382
GO:0043226 organelle 5.29% (10/189) 2.41 2.2e-05 0.000399
GO:0043229 intracellular organelle 5.29% (10/189) 2.42 2.1e-05 0.000415
GO:0044428 nuclear part 2.65% (5/189) 3.85 2.7e-05 0.000445
GO:0044422 organelle part 4.23% (8/189) 2.52 8.8e-05 0.001316
GO:0044446 intracellular organelle part 4.23% (8/189) 2.52 8.8e-05 0.001316
GO:0009059 macromolecule biosynthetic process 4.76% (9/189) 2.31 9.8e-05 0.001391
GO:0005634 nucleus 3.17% (6/189) 2.97 0.000127 0.001724
GO:0006302 double-strand break repair 1.06% (2/189) 6.45 0.000206 0.002691
GO:0034645 cellular macromolecule biosynthetic process 4.23% (8/189) 2.31 0.000239 0.002995
GO:0009451 RNA modification 1.59% (3/189) 4.45 0.000349 0.003906
GO:0043231 intracellular membrane-bounded organelle 3.17% (6/189) 2.71 0.000344 0.003989
GO:0043227 membrane-bounded organelle 3.17% (6/189) 2.71 0.000344 0.003989
GO:0048519 negative regulation of biological process 1.59% (3/189) 4.27 0.000508 0.005484
GO:1990234 transferase complex 1.59% (3/189) 4.19 0.000602 0.00608
GO:0032991 protein-containing complex 5.29% (10/189) 1.82 0.000595 0.006213
GO:0005643 nuclear pore 1.06% (2/189) 5.6 0.000734 0.007179
GO:0031047 gene silencing by RNA 1.06% (2/189) 5.45 0.000915 0.00842
GO:0016458 gene silencing 1.06% (2/189) 5.45 0.000915 0.00842
GO:0071840 cellular component organization or biogenesis 3.17% (6/189) 2.36 0.001191 0.010649
GO:0043170 macromolecule metabolic process 12.17% (23/189) 1.0 0.001244 0.010819
GO:0003723 RNA binding 3.17% (6/189) 2.3 0.001476 0.012486
GO:0001522 pseudouridine synthesis 1.06% (2/189) 4.96 0.001828 0.015053
GO:0006807 nitrogen compound metabolic process 12.7% (24/189) 0.93 0.001905 0.015292
GO:0032774 RNA biosynthetic process 2.12% (4/189) 2.88 0.002238 0.017511
GO:0009987 cellular process 15.34% (29/189) 0.79 0.002498 0.018617
GO:0006396 RNA processing 2.12% (4/189) 2.84 0.002449 0.018697
GO:0010948 negative regulation of cell cycle process 0.53% (1/189) 7.77 0.004575 0.018843
GO:0045839 negative regulation of mitotic nuclear division 0.53% (1/189) 7.77 0.004575 0.018843
GO:0003689 DNA clamp loader activity 0.53% (1/189) 7.77 0.004575 0.018843
GO:0033170 protein-DNA loading ATPase activity 0.53% (1/189) 7.77 0.004575 0.018843
GO:0051985 negative regulation of chromosome segregation 0.53% (1/189) 7.77 0.004575 0.018843
GO:0030915 Smc5-Smc6 complex 0.53% (1/189) 7.77 0.004575 0.018843
GO:0005663 DNA replication factor C complex 0.53% (1/189) 7.77 0.004575 0.018843
GO:0007094 mitotic spindle assembly checkpoint 0.53% (1/189) 7.77 0.004575 0.018843
GO:0033048 negative regulation of mitotic sister chromatid segregation 0.53% (1/189) 7.77 0.004575 0.018843
GO:0106068 SUMO ligase complex 0.53% (1/189) 7.77 0.004575 0.018843
GO:0033046 negative regulation of sister chromatid segregation 0.53% (1/189) 7.77 0.004575 0.018843
GO:0007093 mitotic cell cycle checkpoint 0.53% (1/189) 7.77 0.004575 0.018843
GO:0031577 spindle checkpoint 0.53% (1/189) 7.77 0.004575 0.018843
GO:0045841 negative regulation of mitotic metaphase/anaphase transition 0.53% (1/189) 7.77 0.004575 0.018843
GO:1905819 negative regulation of chromosome separation 0.53% (1/189) 7.77 0.004575 0.018843
GO:2000816 negative regulation of mitotic sister chromatid separation 0.53% (1/189) 7.77 0.004575 0.018843
GO:1901988 negative regulation of cell cycle phase transition 0.53% (1/189) 7.77 0.004575 0.018843
GO:2001251 negative regulation of chromosome organization 0.53% (1/189) 7.77 0.004575 0.018843
GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle 0.53% (1/189) 7.77 0.004575 0.018843
GO:0071174 mitotic spindle checkpoint 0.53% (1/189) 7.77 0.004575 0.018843
GO:0071173 spindle assembly checkpoint 0.53% (1/189) 7.77 0.004575 0.018843
GO:0051784 negative regulation of nuclear division 0.53% (1/189) 7.77 0.004575 0.018843
GO:1901991 negative regulation of mitotic cell cycle phase transition 0.53% (1/189) 7.77 0.004575 0.018843
GO:0045930 negative regulation of mitotic cell cycle 0.53% (1/189) 7.77 0.004575 0.018843
GO:1901576 organic substance biosynthetic process 5.29% (10/189) 1.42 0.004691 0.019069
GO:0097659 nucleic acid-templated transcription 1.59% (3/189) 3.13 0.004998 0.019804
GO:0006351 transcription, DNA-templated 1.59% (3/189) 3.13 0.004998 0.019804
GO:0005575 cellular_component 10.58% (20/189) 0.99 0.002758 0.020077
GO:0010629 negative regulation of gene expression 1.06% (2/189) 4.6 0.003036 0.021596
GO:0009058 biosynthetic process 5.82% (11/189) 1.41 0.003129 0.021763
GO:0044249 cellular biosynthetic process 5.29% (10/189) 1.49 0.003341 0.022737
GO:0044237 cellular metabolic process 12.7% (24/189) 0.79 0.006007 0.023502
GO:0009892 negative regulation of metabolic process 1.06% (2/189) 4.45 0.003747 0.023938
GO:0010605 negative regulation of macromolecule metabolic process 1.06% (2/189) 4.45 0.003747 0.023938
GO:0006281 DNA repair 1.59% (3/189) 3.29 0.003642 0.024254
GO:0051716 cellular response to stimulus 1.59% (3/189) 3.23 0.00412 0.0248
GO:0033554 cellular response to stress 1.59% (3/189) 3.23 0.00412 0.0248
GO:0006974 cellular response to DNA damage stimulus 1.59% (3/189) 3.23 0.00412 0.0248
GO:0044271 cellular nitrogen compound biosynthetic process 3.7% (7/189) 1.69 0.006431 0.02485
GO:0003674 molecular_function 35.98% (68/189) 0.38 0.007143 0.027264
GO:0006260 DNA replication 1.06% (2/189) 3.96 0.007279 0.027449
GO:1905818 regulation of chromosome separation 0.53% (1/189) 6.77 0.00913 0.028865
GO:0007088 regulation of mitotic nuclear division 0.53% (1/189) 6.77 0.00913 0.028865
GO:1901990 regulation of mitotic cell cycle phase transition 0.53% (1/189) 6.77 0.00913 0.028865
GO:1902099 regulation of metaphase/anaphase transition of cell cycle 0.53% (1/189) 6.77 0.00913 0.028865
GO:0033045 regulation of sister chromatid segregation 0.53% (1/189) 6.77 0.00913 0.028865
GO:0019211 phosphatase activator activity 0.53% (1/189) 6.77 0.00913 0.028865
GO:0033044 regulation of chromosome organization 0.53% (1/189) 6.77 0.00913 0.028865
GO:0051983 regulation of chromosome segregation 0.53% (1/189) 6.77 0.00913 0.028865
GO:0033047 regulation of mitotic sister chromatid segregation 0.53% (1/189) 6.77 0.00913 0.028865
GO:0051783 regulation of nuclear division 0.53% (1/189) 6.77 0.00913 0.028865
GO:0030071 regulation of mitotic metaphase/anaphase transition 0.53% (1/189) 6.77 0.00913 0.028865
GO:0010965 regulation of mitotic sister chromatid separation 0.53% (1/189) 6.77 0.00913 0.028865
GO:0006333 chromatin assembly or disassembly 0.53% (1/189) 6.77 0.00913 0.028865
GO:1901987 regulation of cell cycle phase transition 0.53% (1/189) 6.77 0.00913 0.028865
GO:1902494 catalytic complex 1.59% (3/189) 2.87 0.008273 0.030827
GO:0035639 purine ribonucleoside triphosphate binding 7.94% (15/189) 1.0 0.008583 0.031607
GO:0005680 anaphase-promoting complex 0.53% (1/189) 6.19 0.013663 0.038185
GO:0034708 methyltransferase complex 0.53% (1/189) 6.19 0.013663 0.038185
GO:0043527 tRNA methyltransferase complex 0.53% (1/189) 6.19 0.013663 0.038185
GO:0031515 tRNA (m1A) methyltransferase complex 0.53% (1/189) 6.19 0.013663 0.038185
GO:0010564 regulation of cell cycle process 0.53% (1/189) 6.19 0.013663 0.038185
GO:0000152 nuclear ubiquitin ligase complex 0.53% (1/189) 6.19 0.013663 0.038185
GO:0031461 cullin-RING ubiquitin ligase complex 0.53% (1/189) 6.19 0.013663 0.038185
GO:0017056 structural constituent of nuclear pore 0.53% (1/189) 6.19 0.013663 0.038185
GO:0006303 double-strand break repair via nonhomologous end joining 0.53% (1/189) 6.19 0.013663 0.038185
GO:0000726 non-recombinational repair 0.53% (1/189) 6.19 0.013663 0.038185
GO:0000075 cell cycle checkpoint 0.53% (1/189) 6.19 0.013663 0.038185
GO:0007346 regulation of mitotic cell cycle 0.53% (1/189) 6.19 0.013663 0.038185
GO:0030488 tRNA methylation 0.53% (1/189) 6.19 0.013663 0.038185
GO:1901265 nucleoside phosphate binding 8.99% (17/189) 0.84 0.01528 0.041587
GO:0000166 nucleotide binding 8.99% (17/189) 0.84 0.01528 0.041587
GO:0044260 cellular macromolecule metabolic process 8.99% (17/189) 0.84 0.015086 0.041787
GO:0043228 non-membrane-bounded organelle 2.12% (4/189) 2.06 0.015873 0.042103
GO:0043232 intracellular non-membrane-bounded organelle 2.12% (4/189) 2.06 0.015873 0.042103
GO:0006259 DNA metabolic process 2.65% (5/189) 1.79 0.015665 0.042268
GO:0005198 structural molecule activity 2.12% (4/189) 2.05 0.016379 0.043081
GO:0005524 ATP binding 6.88% (13/189) 0.97 0.016722 0.043617
GO:0034470 ncRNA processing 1.06% (2/189) 3.28 0.01812 0.046873
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_39 0.039 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_58 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_76 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_122 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_134 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_139 0.028 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_145 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_160 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_172 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.039 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_220 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.036 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_228 0.038 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_233 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_22 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_27 0.024 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_67 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_74 0.036 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_129 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_185 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_190 0.033 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_196 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_235 0.031 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_245 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_246 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_249 0.026 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_255 0.029 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_259 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_260 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_264 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_46 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_131 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_144 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_4 0.024 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.024 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.04 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.032 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_110 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_115 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_137 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_175 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_181 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.047 Archaeplastida Compare
Zea mays HCCA Cluster_250 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_267 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_275 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_276 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_322 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_329 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_346 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_352 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_363 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.028 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_61 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_91 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.045 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_116 0.029 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_149 0.034 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_159 0.023 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_160 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_8 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_111 0.033 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_146 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_186 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_235 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_237 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.038 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_248 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_288 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_290 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.056 Archaeplastida Compare
Picea abies HCCA Cluster_238 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_239 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_261 0.034 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.035 Archaeplastida Compare
Picea abies HCCA Cluster_360 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_393 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.055 Archaeplastida Compare
Picea abies HCCA Cluster_478 0.028 Archaeplastida Compare
Picea abies HCCA Cluster_492 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_520 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_40 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.058 Archaeplastida Compare
Oryza sativa HCCA Cluster_141 0.04 Archaeplastida Compare
Oryza sativa HCCA Cluster_174 0.033 Archaeplastida Compare
Oryza sativa HCCA Cluster_191 0.028 Archaeplastida Compare
Oryza sativa HCCA Cluster_211 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_293 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_297 0.034 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.046 Archaeplastida Compare
Oryza sativa HCCA Cluster_348 0.031 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.026 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.03 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_26 0.044 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_35 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_60 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_77 0.048 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.047 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_131 0.049 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_173 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_202 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_207 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.035 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_229 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_243 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_260 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_1 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_22 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.071 Archaeplastida Compare
Vitis vinifera HCCA Cluster_53 0.04 Archaeplastida Compare
Vitis vinifera HCCA Cluster_56 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.029 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_123 0.038 Archaeplastida Compare
Vitis vinifera HCCA Cluster_164 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_181 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_196 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_221 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_236 0.042 Archaeplastida Compare
Vitis vinifera HCCA Cluster_238 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_241 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_247 0.027 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.048 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_62 0.028 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_112 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_121 0.02 Archaeplastida Compare
Sequences (189) (download table)

InterPro Domains

GO Terms

Family Terms