AT2G35930 (PUB23)

Aliases : PUB23

Description : plant U-box 23

Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0000440 (SeedPlants) Phylogenetic Tree(s): OG_06_0000440_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G35930
Cluster	HCCA: Cluster_142

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00199950	evm_27.TU.AmTr_v1...	U-box domain-containing protein 31 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00030p00159240	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00043p00215340	evm_27.TU.AmTr_v1...	U-box domain-containing protein 8 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00069p00038840	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00138p00053700	evm_27.TU.AmTr_v1...	U-box domain-containing protein 21 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01006481001	No alias	U-box domain-containing protein 8 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01011139001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01011140001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01011616001	No alias	U-box domain-containing protein 20 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01026542001	No alias	U-box domain-containing protein 27 OS=Arabidopsis thaliana	0.04	Archaeplastida
Gb_17119	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.06	Archaeplastida
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	Archaeplastida
Gb_29734	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os01g64570.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os02g50460.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os03g13740.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os04g34140.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
LOC_Os08g04470.1	No alias	U-box domain-containing protein 8 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os10g03440.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	Archaeplastida
MA_10425865g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.05	Archaeplastida
MA_10430196g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
MA_10432813g0010	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	Archaeplastida
MA_10432981g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
MA_200041g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.06	Archaeplastida
MA_3784951g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_58844g0020	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
MA_6335g0010	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
MA_7928010g0010	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.05	Archaeplastida
MA_95662g0020	No alias	U-box domain-containing protein 27 OS=Arabidopsis...	0.03	Archaeplastida
Mp3g22740.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Mp7g11000.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007000.4.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007010.2.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007020.4.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007040.4.1	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g007050.3.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.02	Archaeplastida
Solyc01g107980.3.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
Solyc04g008100.3.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.06	Archaeplastida
Solyc04g071030.1.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Solyc06g074140.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.02	Archaeplastida
Solyc11g006030.1.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Solyc11g068940.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e002598_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e007109_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e008167_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e014752_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e036030_P001	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e038657_P001	No alias	U-box domain-containing protein 75 OS=Oryza sativa...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0002252	immune effector process	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002679	respiratory burst involved in defense response	IGI	Interproscan
BP	GO:0002679	respiratory burst involved in defense response	RCA	Interproscan
BP	GO:0002682	regulation of immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0004842	ubiquitin-protein transferase activity	IGI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IGI	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009414	response to water deprivation	IMP	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0023014	signal transduction by protein phosphorylation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0035556	intracellular signal transduction	RCA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
BP	GO:0042742	defense response to bacterium	RCA	Interproscan
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045730	respiratory burst	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051193	regulation of cofactor metabolic process	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051865	protein autoubiquitination	IDA	Interproscan
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006955	immune response	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0006984	ER-nucleus signaling pathway	IEP	Neighborhood
BP	GO:0009403	toxin biosynthetic process	IEP	Neighborhood
BP	GO:0009404	toxin metabolic process	IEP	Neighborhood
BP	GO:0009611	response to wounding	IEP	Neighborhood
BP	GO:0009625	response to insect	IEP	Neighborhood
BP	GO:0009700	indole phytoalexin biosynthetic process	IEP	Neighborhood
CC	GO:0009705	plant-type vacuole membrane	IEP	Neighborhood
BP	GO:0009814	defense response, incompatible interaction	IEP	Neighborhood
BP	GO:0009816	defense response to bacterium, incompatible interaction	IEP	Neighborhood
BP	GO:0009893	positive regulation of metabolic process	IEP	Neighborhood
BP	GO:0009894	regulation of catabolic process	IEP	Neighborhood
BP	GO:0009896	positive regulation of catabolic process	IEP	Neighborhood
BP	GO:0010120	camalexin biosynthetic process	IEP	Neighborhood
BP	GO:0010286	heat acclimation	IEP	Neighborhood
BP	GO:0010466	negative regulation of peptidase activity	IEP	Neighborhood
BP	GO:0010506	regulation of autophagy	IEP	Neighborhood
BP	GO:0010508	positive regulation of autophagy	IEP	Neighborhood
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	Neighborhood
BP	GO:0015804	neutral amino acid transport	IEP	Neighborhood
BP	GO:0015824	proline transport	IEP	Neighborhood
BP	GO:0019748	secondary metabolic process	IEP	Neighborhood
BP	GO:0030162	regulation of proteolysis	IEP	Neighborhood
MF	GO:0030414	peptidase inhibitor activity	IEP	Neighborhood
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	Neighborhood
BP	GO:0031329	regulation of cellular catabolic process	IEP	Neighborhood
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	Neighborhood
BP	GO:0032269	negative regulation of cellular protein metabolic process	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0034605	cellular response to heat	IEP	Neighborhood
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Neighborhood
BP	GO:0036294	cellular response to decreased oxygen levels	IEP	Neighborhood
BP	GO:0042631	cellular response to water deprivation	IEP	Neighborhood
BP	GO:0043086	negative regulation of catalytic activity	IEP	Neighborhood
BP	GO:0044092	negative regulation of molecular function	IEP	Neighborhood
BP	GO:0045087	innate immune response	IEP	Neighborhood
BP	GO:0045861	negative regulation of proteolysis	IEP	Neighborhood
BP	GO:0046217	indole phytoalexin metabolic process	IEP	Neighborhood
BP	GO:0051248	negative regulation of protein metabolic process	IEP	Neighborhood
BP	GO:0051336	regulation of hydrolase activity	IEP	Neighborhood
BP	GO:0051346	negative regulation of hydrolase activity	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0052314	phytoalexin metabolic process	IEP	Neighborhood
BP	GO:0052315	phytoalexin biosynthetic process	IEP	Neighborhood
BP	GO:0052317	camalexin metabolic process	IEP	Neighborhood
BP	GO:0052547	regulation of peptidase activity	IEP	Neighborhood
BP	GO:0052548	regulation of endopeptidase activity	IEP	Neighborhood
MF	GO:0061134	peptidase regulator activity	IEP	Neighborhood
MF	GO:0061135	endopeptidase regulator activity	IEP	Neighborhood
BP	GO:0070370	cellular heat acclimation	IEP	Neighborhood
BP	GO:0070887	cellular response to chemical stimulus	IEP	Neighborhood
BP	GO:0071453	cellular response to oxygen levels	IEP	Neighborhood
BP	GO:0071456	cellular response to hypoxia	IEP	Neighborhood
BP	GO:0071462	cellular response to water stimulus	IEP	Neighborhood
BP	GO:0071470	cellular response to osmotic stress	IEP	Neighborhood
BP	GO:0071472	cellular response to salt stress	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	81

External Links

No external refs found!

AT2G35930 (PUB23)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation