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  5. Gb_22724

Gb_22724


Description : Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana (sp|q9sz52|pp344_arath : 1007.0)


Gene families : OG0008852 (Archaeplastida) Phylogenetic Tree(s): OG0008852_tree ,
OG_05_0008546 (LandPlants) Phylogenetic Tree(s): OG_05_0008546_tree ,
OG_06_0005697 (SeedPlants) Phylogenetic Tree(s): OG_06_0005697_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_22724
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AT4G31850 PGR3 proton gradient regulation 3 0.08 Archaeplastida
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
LOC_Os10g28600.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 Archaeplastida
Solyc04g015440.4.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
Zm00001e038060_P001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006353 DNA-templated transcription, termination IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006787 porphyrin-containing compound catabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015996 chlorophyll catabolic process IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033015 tetrapyrrole catabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046149 pigment catabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0047746 chlorophyllase activity IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 733 758
IPR002885 Pentatricopeptide_repeat 767 794
IPR002885 Pentatricopeptide_repeat 191 251
IPR002885 Pentatricopeptide_repeat 268 300
IPR002885 Pentatricopeptide_repeat 512 544
IPR002885 Pentatricopeptide_repeat 1076 1116
IPR002885 Pentatricopeptide_repeat 936 984
IPR002885 Pentatricopeptide_repeat 796 844
IPR002885 Pentatricopeptide_repeat 306 351
IPR002885 Pentatricopeptide_repeat 1006 1047
IPR002885 Pentatricopeptide_repeat 621 670
IPR002885 Pentatricopeptide_repeat 551 599
IPR002885 Pentatricopeptide_repeat 867 914
IPR002885 Pentatricopeptide_repeat 446 493
IPR002885 Pentatricopeptide_repeat 376 425
No external refs found!