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  5. Gb_23778

Gb_23778


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 88.6)


Gene families : OG0001961 (Archaeplastida) Phylogenetic Tree(s): OG0001961_tree ,
OG_05_0001392 (LandPlants) Phylogenetic Tree(s): OG_05_0001392_tree ,
OG_06_0002022 (SeedPlants) Phylogenetic Tree(s): OG_06_0002022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23778
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Gb_00615 No alias no hits & (original description: none) 0.11 Archaeplastida
Gb_01149 No alias no hits & (original description: none) 0.09 Archaeplastida
Gb_04494 No alias no hits & (original description: none) 0.09 Archaeplastida
Gb_04577 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_05244 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_09057 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_19969 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_20124 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_28548 No alias no hits & (original description: none) 0.08 Archaeplastida
Gb_30111 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_39166 No alias no hits & (original description: none) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 134 200
No external refs found!