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  5. Gb_24072

Gb_24072


Description : pre-60S ribosomal subunit export factor (ARX1)


Gene families : OG0004434 (Archaeplastida) Phylogenetic Tree(s): OG0004434_tree ,
OG_05_0004622 (LandPlants) Phylogenetic Tree(s): OG_05_0004622_tree ,
OG_06_0005440 (SeedPlants) Phylogenetic Tree(s): OG_06_0005440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_24072
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AT3G51800 EBP1, ATEBP1, ATG2 metallopeptidase M24 family protein 0.07 Archaeplastida
Cpa|evm.model.tig00000553.33 No alias ERBB-3 BINDING PROTEIN 1 OS=Solanum tuberosum 0.02 Archaeplastida
GSVIVT01003934001 No alias ERBB-3 BINDING PROTEIN 1 OS=Solanum tuberosum 0.04 Archaeplastida
LOC_Os05g28280.1 No alias pre-60S ribosomal subunit export factor (ARX1) 0.04 Archaeplastida
MA_10426694g0010 No alias pre-60S ribosomal subunit export factor (ARX1) 0.04 Archaeplastida
MA_10426694g0020 No alias no hits & (original description: none) 0.09 Archaeplastida
Pp3c2_24640V3.1 No alias metallopeptidase M24 family protein 0.04 Archaeplastida
Pp3c7_14570V3.1 No alias metallopeptidase M24 family protein 0.03 Archaeplastida
Solyc06g007200.4.1 No alias pre-60S ribosomal subunit export factor (ARX1) 0.04 Archaeplastida
Zm00001e027220_P002 No alias pre-60S ribosomal subunit export factor (ARX1) 0.04 Archaeplastida
Zm00001e031491_P001 No alias pre-60S ribosomal subunit export factor (ARX1) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000994 Pept_M24 22 225
No external refs found!