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  5. Gb_24254

Gb_24254


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 248.0)


Gene families : OG0000874 (Archaeplastida) Phylogenetic Tree(s): OG0000874_tree ,
OG_05_0000126 (LandPlants) Phylogenetic Tree(s): OG_05_0000126_tree ,
OG_06_0000049 (SeedPlants) Phylogenetic Tree(s): OG_06_0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_24254
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Gb_00103 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_01356 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 Archaeplastida
Gb_01791 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_02742 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_03910 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_04010 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_06425 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_07329 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 Archaeplastida
Gb_10984 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_13579 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.23 Archaeplastida
Gb_13962 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_14528 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_15173 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_17516 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.26 Archaeplastida
Gb_19407 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_20680 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.13 Archaeplastida
Gb_24463 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_24932 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.19 Archaeplastida
Gb_25674 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.15 Archaeplastida
Gb_27577 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 Archaeplastida
Gb_29931 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.19 Archaeplastida
Gb_30240 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_32236 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 Archaeplastida
Gb_33326 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_33563 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 Archaeplastida
Gb_33581 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.19 Archaeplastida
Gb_34206 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 Archaeplastida
Gb_34518 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.18 Archaeplastida
Gb_35549 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_36149 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_38553 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 Archaeplastida
Gb_41183 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 202 318
IPR025724 GAG-pre-integrase_dom 132 189
No external refs found!