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  5. AT2G38970

AT2G38970


Description : Zinc finger (C3HC4-type RING finger) family protein


Gene families : OG0000379 (Archaeplastida) Phylogenetic Tree(s): OG0000379_tree ,
OG_05_0000514 (LandPlants) Phylogenetic Tree(s): OG_05_0000514_tree ,
OG_06_0001859 (SeedPlants) Phylogenetic Tree(s): OG_06_0001859_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G38970
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00068590 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.04 Archaeplastida
Cpa|evm.model.tig00020801.34 No alias No description available 0.01 Archaeplastida
GSVIVT01016259001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Solyc11g069600.2.1 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0000287 magnesium ion binding IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
MF GO:0003730 mRNA 3'-UTR binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004124 cysteine synthase activity IEP Neighborhood
MF GO:0004422 hypoxanthine phosphoribosyltransferase activity IEP Neighborhood
MF GO:0004582 dolichyl-phosphate beta-D-mannosyltransferase activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Neighborhood
MF GO:0004686 elongation factor-2 kinase activity IEP Neighborhood
MF GO:0004723 calcium-dependent protein serine/threonine phosphatase activity IEP Neighborhood
MF GO:0004844 uracil DNA N-glycosylase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006144 purine nucleobase metabolic process IEP Neighborhood
BP GO:0006166 purine ribonucleoside salvage IEP Neighborhood
BP GO:0006168 adenine salvage IEP Neighborhood
BP GO:0006177 GMP biosynthetic process IEP Neighborhood
BP GO:0006178 guanine salvage IEP Neighborhood
BP GO:0006188 IMP biosynthetic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006268 DNA unwinding involved in DNA replication IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
BP GO:0006568 tryptophan metabolic process IEP Neighborhood
BP GO:0006569 tryptophan catabolic process IEP Neighborhood
BP GO:0006586 indolalkylamine metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
MF GO:0008265 Mo-molybdopterin cofactor sulfurase activity IEP Neighborhood
BP GO:0008361 regulation of cell size IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009074 aromatic amino acid family catabolic process IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
BP GO:0009113 purine nucleobase biosynthetic process IEP Neighborhood
BP GO:0009163 nucleoside biosynthetic process IEP Neighborhood
BP GO:0009308 amine metabolic process IEP Neighborhood
BP GO:0009310 amine catabolic process IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009629 response to gravity IEP Neighborhood
BP GO:0009630 gravitropism IEP Neighborhood
BP GO:0009683 indoleacetic acid metabolic process IEP Neighborhood
BP GO:0009684 indoleacetic acid biosynthetic process IEP Neighborhood
BP GO:0009799 specification of symmetry IEP Neighborhood
BP GO:0009851 auxin biosynthetic process IEP Neighborhood
BP GO:0009855 determination of bilateral symmetry IEP Neighborhood
BP GO:0009888 tissue development IEP Neighborhood
BP GO:0009908 flower development IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009914 hormone transport IEP Neighborhood
CC GO:0009925 basal plasma membrane IEP Neighborhood
BP GO:0009926 auxin polar transport IEP Neighborhood
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP Neighborhood
BP GO:0009958 positive gravitropism IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010073 meristem maintenance IEP Neighborhood
BP GO:0010075 regulation of meristem growth IEP Neighborhood
BP GO:0010082 regulation of root meristem growth IEP Neighborhood
BP GO:0010087 phloem or xylem histogenesis IEP Neighborhood
BP GO:0010089 xylem development IEP Neighborhood
BP GO:0010229 inflorescence development IEP Neighborhood
BP GO:0010338 leaf formation IEP Neighborhood
BP GO:0010358 leaf shaping IEP Neighborhood
BP GO:0010817 regulation of hormone levels IEP Neighborhood
MF GO:0015562 efflux transmembrane transporter activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016783 sulfurtransferase activity IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019827 stem cell population maintenance IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
CC GO:0031501 mannosyltransferase complex IEP Neighborhood
BP GO:0032261 purine nucleotide salvage IEP Neighborhood
BP GO:0032263 GMP salvage IEP Neighborhood
BP GO:0032264 IMP salvage IEP Neighborhood
BP GO:0032392 DNA geometric change IEP Neighborhood
BP GO:0032508 DNA duplex unwinding IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
CC GO:0033185 dolichol-phosphate-mannose synthase complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034754 cellular hormone metabolic process IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0042402 cellular biogenic amine catabolic process IEP Neighborhood
BP GO:0042435 indole-containing compound biosynthetic process IEP Neighborhood
BP GO:0042436 indole-containing compound catabolic process IEP Neighborhood
BP GO:0042451 purine nucleoside biosynthetic process IEP Neighborhood
BP GO:0042455 ribonucleoside biosynthetic process IEP Neighborhood
BP GO:0043096 purine nucleobase salvage IEP Neighborhood
BP GO:0043101 purine-containing compound salvage IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043173 nucleotide salvage IEP Neighborhood
BP GO:0043174 nucleoside salvage IEP Neighborhood
MF GO:0043295 glutathione binding IEP Neighborhood
BP GO:0043473 pigmentation IEP Neighborhood
BP GO:0043476 pigment accumulation IEP Neighborhood
BP GO:0043478 pigment accumulation in response to UV light IEP Neighborhood
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP Neighborhood
BP GO:0043480 pigment accumulation in tissues IEP Neighborhood
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP Neighborhood
BP GO:0043966 histone H3 acetylation IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
CC GO:0045177 apical part of cell IEP Neighborhood
BP GO:0046037 GMP metabolic process IEP Neighborhood
BP GO:0046040 IMP metabolic process IEP Neighborhood
BP GO:0046083 adenine metabolic process IEP Neighborhood
BP GO:0046084 adenine biosynthetic process IEP Neighborhood
BP GO:0046098 guanine metabolic process IEP Neighborhood
BP GO:0046099 guanine biosynthetic process IEP Neighborhood
BP GO:0046100 hypoxanthine metabolic process IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Neighborhood
BP GO:0046218 indolalkylamine catabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048598 embryonic morphogenesis IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048826 cotyledon morphogenesis IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0060359 response to ammonium ion IEP Neighborhood
BP GO:0060918 auxin transport IEP Neighborhood
BP GO:0065001 specification of axis polarity IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
CC GO:0071944 cell periphery IEP Neighborhood
MF GO:0072341 modified amino acid binding IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0090567 reproductive shoot system development IEP Neighborhood
MF GO:0097506 deaminated base DNA N-glycosylase activity IEP Neighborhood
CC GO:0098590 plasma membrane region IEP Neighborhood
BP GO:0098727 maintenance of cell number IEP Neighborhood
MF GO:0106130 purine phosphoribosyltransferase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1900750 oligopeptide binding IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1905392 plant organ morphogenesis IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 71 116
IPR032838 Vwaint_dom 599 672
IPR002035 VWF_A 253 429
No external refs found!