Gb_26175

Description : transcription factor (mTERF)

Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0000021 (SeedPlants) Phylogenetic Tree(s): OG_06_0000021_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_26175
Cluster	HCCA: Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00181420	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00010p00225250	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00010p00225430	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00010p00230750	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00010p00235420	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.06	Archaeplastida
AMTR_s00010p00236050	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00010p00236880	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.06	Archaeplastida
AMTR_s00010p00255890	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00066p00157030	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00126p00036130	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00126p00036170	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s01293p00010460	evm_27.TU.AmTr_v1...	No description available	0.03	Archaeplastida
AMTR_s01360p00009540	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
GSVIVT01022213001	No alias	RNA biosynthesis.organelle...	0.08	Archaeplastida
GSVIVT01028380001	No alias	RNA biosynthesis.organelle...	0.04	Archaeplastida
Gb_03682	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Gb_07257	No alias	TAC15 cofactor of plastid-encoded RNA polymerase....	0.04	Archaeplastida
Gb_25286	No alias	transcription factor (mTERF)	0.05	Archaeplastida
LOC_Os02g51450.2	No alias	transcription factor (mTERF)	0.04	Archaeplastida
LOC_Os04g54510.1	No alias	transcription factor (mTERF)	0.04	Archaeplastida
LOC_Os05g34160.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
LOC_Os06g12070.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
LOC_Os06g12080.1	No alias	transcription factor (mTERF)	0.04	Archaeplastida
LOC_Os11g14130.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_192398g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_3151g0010	No alias	transcription factor (mTERF)	0.04	Archaeplastida
MA_493420g0010	No alias	transcription factor (mTERF)	0.08	Archaeplastida
MA_7539255g0010	No alias	no hits & (original description: none)	0.07	Archaeplastida
MA_92135g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Solyc02g067960.3.1	No alias	transcription factor (mTERF)	0.04	Archaeplastida
Solyc04g051880.3.1	No alias	transcription factor (mTERF)	0.05	Archaeplastida
Solyc04g072500.1.1	No alias	transcription factor (mTERF)	0.07	Archaeplastida
Solyc04g072540.3.1	No alias	transcription factor (mTERF)	0.06	Archaeplastida
Solyc12g010650.1.1	No alias	transcription factor (mTERF). component DSP2 of DSP...	0.05	Archaeplastida
Zm00001e010589_P001	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Zm00001e022322_P001	No alias	transcription factor (mTERF)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0051082	unfolded protein binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003690	MTERF	73	175
IPR003690	MTERF	152	327

External Links

No external refs found!

Gb_26175

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation