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  5. Gb_26268

Gb_26268


Description : component Pcf11 of Cleavage Factor II (CF-IIm) complex


Gene families : OG0001781 (Archaeplastida) Phylogenetic Tree(s): OG0001781_tree ,
OG_05_0002038 (LandPlants) Phylogenetic Tree(s): OG_05_0002038_tree ,
OG_06_0001962 (SeedPlants) Phylogenetic Tree(s): OG_06_0001962_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26268
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00210200 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.08 Archaeplastida
AT2G36480 No alias ENTH/VHS family protein 0.05 Archaeplastida
Cpa|evm.model.tig00000396.26 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.01 Archaeplastida
GSVIVT01012646001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.08 Archaeplastida
GSVIVT01033783001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.06 Archaeplastida
LOC_Os08g08830.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.06 Archaeplastida
LOC_Os09g39270.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.1 Archaeplastida
MA_10040687g0010 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.04 Archaeplastida
MA_10433250g0020 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.05 Archaeplastida
MA_132868g0010 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.07 Archaeplastida
Mp8g18940.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.09 Archaeplastida
Pp3c16_6360V3.1 No alias PCF11P-similar protein 4 0.06 Archaeplastida
Pp3c16_6390V3.1 No alias PCF11P-similar protein 4 0.08 Archaeplastida
Solyc09g009120.4.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.07 Archaeplastida
Solyc10g083590.2.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.07 Archaeplastida
Solyc12g094490.2.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.03 Archaeplastida
Zm00001e009485_P001 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.1 Archaeplastida
Zm00001e021648_P002 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.09 Archaeplastida
Zm00001e033620_P001 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.08 Archaeplastida
Zm00001e039948_P002 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006903 RNA_pol_II-bd 156 209
No external refs found!