- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : DNA-directed RNA polymerase subunit beta OS=Cycas taitungensis (sp|a6h5f7|rpoc2_cycta : 278.0)
Gene families : OG0000707 (Archaeplastida) Phylogenetic Tree(s): OG0000707_tree ,
OG_05_0001017 (LandPlants) Phylogenetic Tree(s): OG_05_0001017_tree ,
OG_06_0000818 (SeedPlants) Phylogenetic Tree(s): OG_06_0000818_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_26285 | |
| Cluster | HCCA: Cluster_30 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| ATCG00170 | RPOC2 | DNA-directed RNA polymerase family protein | 0.03 | Archaeplastida | |
| ATCG00180 | RPOC1 | DNA-directed RNA polymerase family protein | 0.03 | Archaeplastida | |
| GSVIVT01019173001 | No alias | DNA-directed RNA polymerase subunit beta OS=Vitis vinifera | 0.04 | Archaeplastida | |
| LOC_Os02g24614.1 | No alias | RpoC1 core component plastid-encoded RNA polymerase | 0.09 | Archaeplastida | |
| LOC_Os04g16830.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Oryza sativa... | 0.06 | Archaeplastida | |
| Mp1g00060.1 | No alias | RpoC2 core component plastid-encoded RNA polymerase | 0.09 | Archaeplastida | |
| Mp4g02290.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Marchantia... | 0.05 | Archaeplastida | |
| Mp4g05220.1 | No alias | No annotation | 0.03 | Archaeplastida | |
| Mp5g11220.1 | No alias | no hits & (original description: none) | 0.05 | Archaeplastida | |
| Solyc00g500052.1.1 | No alias | RpoC1 core component plastid-encoded RNA polymerase.... | 0.09 | Archaeplastida | |
| Solyc00g500135.1.1 | No alias | RpoC1 core component plastid-encoded RNA polymerase.... | 0.09 | Archaeplastida | |
| Solyc00g500205.1.1 | No alias | RpoC1 core component plastid-encoded RNA polymerase.... | 0.09 | Archaeplastida | |
| Solyc00g500290.1.1 | No alias | RpoC2 core component plastid-encoded RNA polymerase | 0.03 | Archaeplastida | |
| Solyc01g017370.2.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Nicotiana... | 0.08 | Archaeplastida | |
| Solyc01g017470.3.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Solanum... | 0.09 | Archaeplastida | |
| Solyc01g056840.1.1 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
| Solyc11g062110.1.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Nicotiana... | 0.1 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0003954 | NADH dehydrogenase activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005840 | ribosome | IEP | Neighborhood |
| BP | GO:0006091 | generation of precursor metabolites and energy | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| CC | GO:0009521 | photosystem | IEP | Neighborhood |
| CC | GO:0009522 | photosystem I | IEP | Neighborhood |
| CC | GO:0009579 | thylakoid | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0015979 | photosynthesis | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | Neighborhood |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Neighborhood |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Neighborhood |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0022900 | electron transport chain | IEP | Neighborhood |
| BP | GO:0022904 | respiratory electron transport chain | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
| BP | GO:0042773 | ATP synthesis coupled electron transport | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044436 | thylakoid part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
| MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |