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Gb_26477


Description : Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana (sp|q9szl5|pp356_arath : 191.0)


Gene families : OG0010946 (Archaeplastida) Phylogenetic Tree(s): OG0010946_tree ,
OG_05_0010887 (LandPlants) Phylogenetic Tree(s): OG_05_0010887_tree ,
OG_06_0010799 (SeedPlants) Phylogenetic Tree(s): OG_06_0010799_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_26477
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00166290 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g38150... 0.05 Archaeplastida
LOC_Os06g20354.1 No alias Pentatricopeptide repeat-containing protein At4g38150... 0.03 Archaeplastida
Zm00001e041548_P001 No alias Pentatricopeptide repeat-containing protein At4g38150... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 173 198
IPR002885 Pentatricopeptide_repeat 271 309
IPR002885 Pentatricopeptide_repeat 201 250
No external refs found!