AT1G02030

Description : C2H2-like zinc finger protein

Gene families : OG0000103 (Archaeplastida) Phylogenetic Tree(s): OG0000103_tree ,
OG_05_0000039 (LandPlants) Phylogenetic Tree(s): OG_05_0000039_tree ,
OG_06_0003349 (SeedPlants) Phylogenetic Tree(s): OG_06_0003349_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G02030
Cluster	HCCA: Cluster_176

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01031461001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	Archaeplastida
Gb_37343	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
MA_602g0010	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc09g008440.1.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e019350_P001	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IEP	Neighborhood
BP	GO:0000018	regulation of DNA recombination	IEP	Neighborhood
BP	GO:0002790	peptide secretion	IEP	Neighborhood
BP	GO:0002831	regulation of response to biotic stimulus	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003729	mRNA binding	IEP	Neighborhood
MF	GO:0005484	SNAP receptor activity	IEP	Neighborhood
CC	GO:0005798	Golgi-associated vesicle	IEP	Neighborhood
BP	GO:0007005	mitochondrion organization	IEP	Neighborhood
BP	GO:0007276	gamete generation	IEP	Neighborhood
BP	GO:0009306	protein secretion	IEP	Neighborhood
BP	GO:0010074	maintenance of meristem identity	IEP	Neighborhood
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	Neighborhood
CC	GO:0030133	transport vesicle	IEP	Neighborhood
CC	GO:0030135	coated vesicle	IEP	Neighborhood
CC	GO:0030136	clathrin-coated vesicle	IEP	Neighborhood
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	Neighborhood
BP	GO:0031123	RNA 3'-end processing	IEP	Neighborhood
BP	GO:0032101	regulation of response to external stimulus	IEP	Neighborhood
BP	GO:0032875	regulation of DNA endoreduplication	IEP	Neighborhood
BP	GO:0032877	positive regulation of DNA endoreduplication	IEP	Neighborhood
BP	GO:0032940	secretion by cell	IEP	Neighborhood
BP	GO:0045740	positive regulation of DNA replication	IEP	Neighborhood
BP	GO:0045787	positive regulation of cell cycle	IEP	Neighborhood
BP	GO:0045910	negative regulation of DNA recombination	IEP	Neighborhood
BP	GO:0046903	secretion	IEP	Neighborhood
BP	GO:0051052	regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Neighborhood
BP	GO:0051302	regulation of cell division	IEP	Neighborhood
BP	GO:0090068	positive regulation of cell cycle process	IEP	Neighborhood
BP	GO:0090329	regulation of DNA-dependent DNA replication	IEP	Neighborhood
BP	GO:1900150	regulation of defense response to fungus	IEP	Neighborhood
BP	GO:2000105	positive regulation of DNA-dependent DNA replication	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G02030

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation