AT2G40810 (ATG18C, ATATG18C)

Aliases : ATG18C, ATATG18C

Description : homolog of yeast autophagy 18C

Gene families : OG0001600 (Archaeplastida) Phylogenetic Tree(s): OG0001600_tree ,
OG_05_0001405 (LandPlants) Phylogenetic Tree(s): OG_05_0001405_tree ,
OG_06_0001795 (SeedPlants) Phylogenetic Tree(s): OG_06_0001795_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G40810
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01010943001	No alias	Vesicle trafficking.autophagosome formation.ATG9-2-18...	0.03	Archaeplastida
LOC_Os01g70780.1	No alias	component ATG18 of autophagosome ATG9-2-18 membrane...	0.02	Archaeplastida
MA_29107g0020	No alias	component ATG18 of autophagosome ATG9-2-18 membrane...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005543	phospholipid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006914	autophagy	IBA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0031090	organelle membrane	IBA	Interproscan
BP	GO:0031667	response to nutrient levels	None	Extended
MF	GO:0035091	phosphatidylinositol binding	None	Extended
BP	GO:0042594	response to starvation	IBA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0061919	process utilizing autophagic mechanism	None	Extended
MF	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	IBA	Interproscan
MF	GO:1901981	phosphatidylinositol phosphate binding	None	Extended
MF	GO:1902936	phosphatidylinositol bisphosphate binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000255	allantoin metabolic process	IEP	Neighborhood
MF	GO:0000268	peroxisome targeting sequence binding	IEP	Neighborhood
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
BP	GO:0000578	embryonic axis specification	IEP	Neighborhood
CC	GO:0000932	P-body	IEP	Neighborhood
MF	GO:0000976	transcription regulatory region sequence-specific DNA binding	IEP	Neighborhood
MF	GO:0000987	proximal promoter sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0001560	regulation of cell growth by extracellular stimulus	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003997	acyl-CoA oxidase activity	IEP	Neighborhood
MF	GO:0004605	phosphatidate cytidylyltransferase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
MF	GO:0005053	peroxisome matrix targeting signal-2 binding	IEP	Neighborhood
MF	GO:0005354	galactose transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006625	protein targeting to peroxisome	IEP	Neighborhood
BP	GO:0007031	peroxisome organization	IEP	Neighborhood
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0009643	photosynthetic acclimation	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0010262	somatic embryogenesis	IEP	Neighborhood
MF	GO:0015145	monosaccharide transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015149	hexose transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015919	peroxisomal membrane transport	IEP	Neighborhood
BP	GO:0016558	protein import into peroxisome matrix	IEP	Neighborhood
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016812	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
MF	GO:0017151	DEAD/H-box RNA helicase binding	IEP	Neighborhood
BP	GO:0019428	allantoin biosynthetic process	IEP	Neighborhood
CC	GO:0019897	extrinsic component of plasma membrane	IEP	Neighborhood
MF	GO:0030145	manganese ion binding	IEP	Neighborhood
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	Neighborhood
CC	GO:0031234	extrinsic component of cytoplasmic side of plasma membrane	IEP	Neighborhood
BP	GO:0032509	endosome transport via multivesicular body sorting pathway	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
MF	GO:0033971	hydroxyisourate hydrolase activity	IEP	Neighborhood
MF	GO:0035064	methylated histone binding	IEP	Neighborhood
CC	GO:0035770	ribonucleoprotein granule	IEP	Neighborhood
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	Neighborhood
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043407	negative regulation of MAP kinase activity	IEP	Neighborhood
BP	GO:0043409	negative regulation of MAPK cascade	IEP	Neighborhood
BP	GO:0043574	peroxisomal transport	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Neighborhood
BP	GO:0045132	meiotic chromosome segregation	IEP	Neighborhood
MF	GO:0050072	m7G(5')pppN diphosphatase activity	IEP	Neighborhood
BP	GO:0051260	protein homooligomerization	IEP	Neighborhood
BP	GO:0051262	protein tetramerization	IEP	Neighborhood
BP	GO:0051289	protein homotetramerization	IEP	Neighborhood
BP	GO:0051445	regulation of meiotic cell cycle	IEP	Neighborhood
BP	GO:0051446	positive regulation of meiotic cell cycle	IEP	Neighborhood
MF	GO:0051997	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Neighborhood
MF	GO:0070567	cytidylyltransferase activity	IEP	Neighborhood
BP	GO:0071806	protein transmembrane transport	IEP	Neighborhood
BP	GO:0071985	multivesicular body sorting pathway	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072662	protein localization to peroxisome	IEP	Neighborhood
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	Neighborhood
BP	GO:0098813	nuclear chromosome segregation	IEP	Neighborhood
MF	GO:0140030	modification-dependent protein binding	IEP	Neighborhood
MF	GO:0140034	methylation-dependent protein binding	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1900055	regulation of leaf senescence	IEP	Neighborhood
BP	GO:1900056	negative regulation of leaf senescence	IEP	Neighborhood
BP	GO:1905622	negative regulation of leaf development	IEP	Neighborhood
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Neighborhood
BP	GO:2000024	regulation of leaf development	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	248	273

External Links

No external refs found!

AT2G40810 (ATG18C, ATATG18C)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation