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  5. Gb_27586

Gb_27586


Description : CORVET-specific component VPS8 of HOPS/CORVET membrane tethering complexes


Gene families : OG0004740 (Archaeplastida) Phylogenetic Tree(s): OG0004740_tree ,
OG_05_0005069 (LandPlants) Phylogenetic Tree(s): OG_05_0005069_tree ,
OG_06_0007490 (SeedPlants) Phylogenetic Tree(s): OG_06_0007490_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_27586
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00112150 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane... 0.03 Archaeplastida
AT4G00800 No alias transducin family protein / WD-40 repeat family protein 0.1 Archaeplastida
Cre13.g606350 No alias No description available 0.06 Archaeplastida
GSVIVT01027438001 No alias Vesicle trafficking.target membrane... 0.06 Archaeplastida
LOC_Os02g03220.1 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.03 Archaeplastida
MA_10428293g0010 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.03 Archaeplastida
MA_10432728g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10432728g0020 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_37485g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
Mp8g08230.1 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.06 Archaeplastida
Pp3c17_2710V3.1 No alias transducin family protein / WD-40 repeat family protein 0.08 Archaeplastida
Pp3c7_20800V3.1 No alias transducin family protein / WD-40 repeat family protein 0.06 Archaeplastida
Solyc05g044610.3.1 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.06 Archaeplastida
Zm00001e013515_P001 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR025941 Vps8_central_dom 1131 1225
No external refs found!