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  5. Gb_28180

Gb_28180


Description : Proteasome activator subunit 4 OS=Arabidopsis thaliana (sp|f4jc97|psme4_arath : 237.0)


Gene families : OG0002150 (Archaeplastida) Phylogenetic Tree(s): OG0002150_tree ,
OG_05_0003397 (LandPlants) Phylogenetic Tree(s): OG_05_0003397_tree ,
OG_06_0027416 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28180
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00109710 evm_27.TU.AmTr_v1... Proteasome activator subunit 4 OS=Arabidopsis thaliana 0.08 Archaeplastida
Cre14.g628702 No alias Proteasome activator subunit 4 OS=Arabidopsis thaliana 0.03 Archaeplastida
MA_10436103g0010 No alias No annotation 0.02 Archaeplastida
Smo179234 No alias Proteasome activator subunit 4 OS=Arabidopsis thaliana 0.06 Archaeplastida
Smo236562 No alias Proteasome activator subunit 4 OS=Arabidopsis thaliana 0.04 Archaeplastida
Zm00001e031009_P002 No alias Proteasome activator subunit 4 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR032430 Blm10_mid 81 269
No external refs found!