Aliases : EMB2776, LIS
Description : WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
Gene families : OG0005235 (Archaeplastida) Phylogenetic Tree(s): OG0005235_tree ,
OG_05_0005836 (LandPlants) Phylogenetic Tree(s): OG_05_0005836_tree ,
OG_06_0007206 (SeedPlants) Phylogenetic Tree(s): OG_06_0007206_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT2G41500 | |
Cluster | HCCA: Cluster_168 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | ISS | Interproscan |
BP | GO:0000278 | mitotic cell cycle | RCA | Interproscan |
BP | GO:0000398 | mRNA splicing, via spliceosome | ISS | Interproscan |
BP | GO:0000398 | mRNA splicing, via spliceosome | RCA | Interproscan |
BP | GO:0000741 | karyogamy | RCA | Interproscan |
BP | GO:0001709 | cell fate determination | IMP | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
CC | GO:0005681 | spliceosomal complex | ISS | Interproscan |
BP | GO:0006312 | mitotic recombination | RCA | Interproscan |
BP | GO:0006396 | RNA processing | RCA | Interproscan |
BP | GO:0007267 | cell-cell signaling | IMP | Interproscan |
BP | GO:0009553 | embryo sac development | IMP | Interproscan |
BP | GO:0009560 | embryo sac egg cell differentiation | IMP | Interproscan |
BP | GO:0009560 | embryo sac egg cell differentiation | RCA | Interproscan |
BP | GO:0009640 | photomorphogenesis | RCA | Interproscan |
BP | GO:0009793 | embryo development ending in seed dormancy | RCA | Interproscan |
BP | GO:0009845 | seed germination | RCA | Interproscan |
BP | GO:0009909 | regulation of flower development | RCA | Interproscan |
BP | GO:0009933 | meristem structural organization | RCA | Interproscan |
BP | GO:0010162 | seed dormancy process | RCA | Interproscan |
BP | GO:0010182 | sugar mediated signaling pathway | RCA | Interproscan |
BP | GO:0010228 | vegetative to reproductive phase transition of meristem | RCA | Interproscan |
BP | GO:0016567 | protein ubiquitination | RCA | Interproscan |
BP | GO:0016571 | histone methylation | RCA | Interproscan |
BP | GO:0016579 | protein deubiquitination | RCA | Interproscan |
CC | GO:0016607 | nuclear speck | IDA | Interproscan |
BP | GO:0019915 | lipid storage | RCA | Interproscan |
BP | GO:0045893 | positive regulation of transcription, DNA-templated | RCA | Interproscan |
BP | GO:0050826 | response to freezing | RCA | Interproscan |
CC | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex | ISS | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000160 | phosphorelay signal transduction system | IEP | Neighborhood |
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Neighborhood |
MF | GO:0000287 | magnesium ion binding | IEP | Neighborhood |
BP | GO:0000303 | response to superoxide | IEP | Neighborhood |
BP | GO:0000305 | response to oxygen radical | IEP | Neighborhood |
BP | GO:0000354 | cis assembly of pre-catalytic spliceosome | IEP | Neighborhood |
CC | GO:0000418 | RNA polymerase IV complex | IEP | Neighborhood |
CC | GO:0000419 | RNA polymerase V complex | IEP | Neighborhood |
CC | GO:0000813 | ESCRT I complex | IEP | Neighborhood |
CC | GO:0000932 | P-body | IEP | Neighborhood |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Neighborhood |
BP | GO:0002679 | respiratory burst involved in defense response | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003677 | DNA binding | IEP | Neighborhood |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
MF | GO:0003862 | 3-isopropylmalate dehydrogenase activity | IEP | Neighborhood |
MF | GO:0003997 | acyl-CoA oxidase activity | IEP | Neighborhood |
MF | GO:0004089 | carbonate dehydratase activity | IEP | Neighborhood |
MF | GO:0004605 | phosphatidate cytidylyltransferase activity | IEP | Neighborhood |
MF | GO:0004708 | MAP kinase kinase activity | IEP | Neighborhood |
MF | GO:0004860 | protein kinase inhibitor activity | IEP | Neighborhood |
MF | GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity | IEP | Neighborhood |
MF | GO:0005354 | galactose transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
CC | GO:0005665 | RNA polymerase II, core complex | IEP | Neighborhood |
CC | GO:0005686 | U2 snRNP | IEP | Neighborhood |
CC | GO:0005956 | protein kinase CK2 complex | IEP | Neighborhood |
BP | GO:0006342 | chromatin silencing | IEP | Neighborhood |
BP | GO:0006401 | RNA catabolic process | IEP | Neighborhood |
BP | GO:0006402 | mRNA catabolic process | IEP | Neighborhood |
BP | GO:0006446 | regulation of translational initiation | IEP | Neighborhood |
BP | GO:0006551 | leucine metabolic process | IEP | Neighborhood |
BP | GO:0006606 | protein import into nucleus | IEP | Neighborhood |
BP | GO:0006626 | protein targeting to mitochondrion | IEP | Neighborhood |
BP | GO:0006884 | cell volume homeostasis | IEP | Neighborhood |
BP | GO:0006970 | response to osmotic stress | IEP | Neighborhood |
BP | GO:0007059 | chromosome segregation | IEP | Neighborhood |
BP | GO:0007062 | sister chromatid cohesion | IEP | Neighborhood |
MF | GO:0008022 | protein C-terminus binding | IEP | Neighborhood |
MF | GO:0008134 | transcription factor binding | IEP | Neighborhood |
MF | GO:0008327 | methyl-CpG binding | IEP | Neighborhood |
BP | GO:0009057 | macromolecule catabolic process | IEP | Neighborhood |
BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | Neighborhood |
BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | Neighborhood |
BP | GO:0009098 | leucine biosynthetic process | IEP | Neighborhood |
BP | GO:0009403 | toxin biosynthetic process | IEP | Neighborhood |
BP | GO:0009651 | response to salt stress | IEP | Neighborhood |
BP | GO:0009700 | indole phytoalexin biosynthetic process | IEP | Neighborhood |
BP | GO:0009733 | response to auxin | IEP | Neighborhood |
BP | GO:0009850 | auxin metabolic process | IEP | Neighborhood |
BP | GO:0009851 | auxin biosynthetic process | IEP | Neighborhood |
BP | GO:0009873 | ethylene-activated signaling pathway | IEP | Neighborhood |
BP | GO:0009892 | negative regulation of metabolic process | IEP | Neighborhood |
BP | GO:0010120 | camalexin biosynthetic process | IEP | Neighborhood |
BP | GO:0010262 | somatic embryogenesis | IEP | Neighborhood |
CC | GO:0010369 | chromocenter | IEP | Neighborhood |
BP | GO:0010440 | stomatal lineage progression | IEP | Neighborhood |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Neighborhood |
BP | GO:0010629 | negative regulation of gene expression | IEP | Neighborhood |
CC | GO:0015030 | Cajal body | IEP | Neighborhood |
MF | GO:0015145 | monosaccharide transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0015149 | hexose transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0016441 | posttranscriptional gene silencing | IEP | Neighborhood |
BP | GO:0016458 | gene silencing | IEP | Neighborhood |
MF | GO:0016634 | oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | IEP | Neighborhood |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
BP | GO:0017038 | protein import | IEP | Neighborhood |
MF | GO:0017151 | DEAD/H-box RNA helicase binding | IEP | Neighborhood |
MF | GO:0019207 | kinase regulator activity | IEP | Neighborhood |
MF | GO:0019209 | kinase activator activity | IEP | Neighborhood |
MF | GO:0019210 | kinase inhibitor activity | IEP | Neighborhood |
BP | GO:0019439 | aromatic compound catabolic process | IEP | Neighborhood |
MF | GO:0019887 | protein kinase regulator activity | IEP | Neighborhood |
MF | GO:0019899 | enzyme binding | IEP | Neighborhood |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
MF | GO:0030145 | manganese ion binding | IEP | Neighborhood |
MF | GO:0030234 | enzyme regulator activity | IEP | Neighborhood |
MF | GO:0030291 | protein serine/threonine kinase inhibitor activity | IEP | Neighborhood |
MF | GO:0030295 | protein kinase activator activity | IEP | Neighborhood |
MF | GO:0030332 | cyclin binding | IEP | Neighborhood |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
BP | GO:0031047 | gene silencing by RNA | IEP | Neighborhood |
BP | GO:0031048 | chromatin silencing by small RNA | IEP | Neighborhood |
BP | GO:0031087 | deadenylation-independent decapping of nuclear-transcribed mRNA | IEP | Neighborhood |
BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Neighborhood |
BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
BP | GO:0034504 | protein localization to nucleus | IEP | Neighborhood |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Neighborhood |
MF | GO:0035064 | methylated histone binding | IEP | Neighborhood |
BP | GO:0035556 | intracellular signal transduction | IEP | Neighborhood |
CC | GO:0035770 | ribonucleoprotein granule | IEP | Neighborhood |
CC | GO:0036452 | ESCRT complex | IEP | Neighborhood |
CC | GO:0036464 | cytoplasmic ribonucleoprotein granule | IEP | Neighborhood |
BP | GO:0040029 | regulation of gene expression, epigenetic | IEP | Neighborhood |
BP | GO:0044030 | regulation of DNA methylation | IEP | Neighborhood |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Neighborhood |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Neighborhood |
BP | GO:0045132 | meiotic chromosome segregation | IEP | Neighborhood |
BP | GO:0045730 | respiratory burst | IEP | Neighborhood |
BP | GO:0045814 | negative regulation of gene expression, epigenetic | IEP | Neighborhood |
BP | GO:0046217 | indole phytoalexin metabolic process | IEP | Neighborhood |
BP | GO:0046700 | heterocycle catabolic process | IEP | Neighborhood |
BP | GO:0048519 | negative regulation of biological process | IEP | Neighborhood |
BP | GO:0048523 | negative regulation of cellular process | IEP | Neighborhood |
MF | GO:0050072 | m7G(5')pppN diphosphatase activity | IEP | Neighborhood |
BP | GO:0051170 | import into nucleus | IEP | Neighborhood |
BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0051604 | protein maturation | IEP | Neighborhood |
BP | GO:0052314 | phytoalexin metabolic process | IEP | Neighborhood |
BP | GO:0052315 | phytoalexin biosynthetic process | IEP | Neighborhood |
BP | GO:0052317 | camalexin metabolic process | IEP | Neighborhood |
MF | GO:0070567 | cytidylyltransferase activity | IEP | Neighborhood |
BP | GO:0070585 | protein localization to mitochondrion | IEP | Neighborhood |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
BP | GO:0072655 | establishment of protein localization to mitochondrion | IEP | Neighborhood |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
CC | GO:0098687 | chromosomal region | IEP | Neighborhood |
MF | GO:0098772 | molecular function regulator | IEP | Neighborhood |
BP | GO:0098813 | nuclear chromosome segregation | IEP | Neighborhood |
CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
MF | GO:0140030 | modification-dependent protein binding | IEP | Neighborhood |
MF | GO:0140034 | methylation-dependent protein binding | IEP | Neighborhood |
MF | GO:0140110 | transcription regulator activity | IEP | Neighborhood |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Neighborhood |
No external refs found! |