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  5. Gb_28646

Gb_28646


Description : RING-HC-class E3 ligase


Gene families : OG0001773 (Archaeplastida) Phylogenetic Tree(s): OG0001773_tree ,
OG_05_0002127 (LandPlants) Phylogenetic Tree(s): OG_05_0002127_tree ,
OG_06_0002842 (SeedPlants) Phylogenetic Tree(s): OG_06_0002842_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28646
Cluster HCCA: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00181230 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00024p00181670 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa... 0.02 Archaeplastida
Cre14.g625802 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
GSVIVT01018223001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
MA_10425980g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10430809g0020 No alias RING-HC-class E3 ligase 0.03 Archaeplastida
MA_592562g0010 No alias RING-HC-class E3 ligase 0.02 Archaeplastida
Mp6g03540.1 No alias RING-HC-class E3 ligase 0.02 Archaeplastida
Pp3c12_18130V3.1 No alias histone mono-ubiquitination 2 0.03 Archaeplastida
Pp3c16_2030V3.1 No alias histone mono-ubiquitination 1 0.02 Archaeplastida
Smo175555 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Solyc11g013370.3.1 No alias RING-HC-class E3 ligase 0.03 Archaeplastida
Zm00001e013143_P005 No alias RING-HC-class E3 ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!