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  5. AT2G41850

AT2G41850 (ADPG2, PGAZAT)


Aliases : ADPG2, PGAZAT

Description : polygalacturonase abscission zone A. thaliana


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000273 (LandPlants) Phylogenetic Tree(s): OG_05_0000273_tree ,
OG_06_0000208 (SeedPlants) Phylogenetic Tree(s): OG_06_0000208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G41850
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT1G05650 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT1G05660 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01004007001 No alias Polygalacturonase OS=Prunus persica 0.04 Archaeplastida
GSVIVT01008062001 No alias Polygalacturonase OS=Juniperus ashei 0.04 Archaeplastida
GSVIVT01032114001 No alias Polygalacturonase OS=Actinidia deliciosa 0.03 Archaeplastida
GSVIVT01032118001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01033362001 No alias Cell wall.pectin.modification and... 0.05 Archaeplastida
GSVIVT01033364001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01038241001 No alias Polygalacturonase OS=Prunus persica 0.03 Archaeplastida
Gb_07779 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
LOC_Os01g07790.1 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os01g19170.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os01g43490.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
LOC_Os05g50260.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_101764g0010 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_10431579g0010 No alias Polygalacturonase OS=Cryptomeria japonica... 0.03 Archaeplastida
MA_285723g0010 No alias Polygalacturonase OS=Persea americana... 0.03 Archaeplastida
MA_427851g0010 No alias Polygalacturonase OS=Cryptomeria japonica... 0.02 Archaeplastida
Solyc01g087280.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g067640.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc08g014540.1.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g009420.3.1 No alias Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc12g019120.2.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g019220.1.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc12g096730.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Zm00001e006091_P001 No alias polygalacturonase (QRT2) 0.03 Archaeplastida
Zm00001e026160_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e026240_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e032294_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IDA Interproscan
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
BP GO:0009830 cell wall modification involved in abscission RCA Interproscan
BP GO:0009830 cell wall modification involved in abscission TAS Interproscan
BP GO:0009901 anther dehiscence IMP Interproscan
BP GO:0010047 fruit dehiscence IMP Interproscan
BP GO:0010227 floral organ abscission IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000014 single-stranded DNA endodeoxyribonuclease activity IEP Neighborhood
BP GO:0003156 regulation of animal organ formation IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004520 endodeoxyribonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004536 deoxyribonuclease activity IEP Neighborhood
MF GO:0004629 phospholipase C activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005242 inward rectifier potassium channel activity IEP Neighborhood
MF GO:0005244 voltage-gated ion channel activity IEP Neighborhood
MF GO:0005249 voltage-gated potassium channel activity IEP Neighborhood
MF GO:0005261 cation channel activity IEP Neighborhood
MF GO:0005267 potassium channel activity IEP Neighborhood
CC GO:0005887 integral component of plasma membrane IEP Neighborhood
BP GO:0006308 DNA catabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
MF GO:0008878 glucose-1-phosphate adenylyltransferase activity IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009267 cellular response to starvation IEP Neighborhood
BP GO:0009395 phospholipid catabolic process IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009624 response to nematode IEP Neighborhood
BP GO:0009828 plant-type cell wall loosening IEP Neighborhood
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009991 response to extracellular stimulus IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0015175 neutral amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
BP GO:0016036 cellular response to phosphate starvation IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
CC GO:0017119 Golgi transport complex IEP Neighborhood
BP GO:0019374 galactolipid metabolic process IEP Neighborhood
BP GO:0019375 galactolipid biosynthetic process IEP Neighborhood
MF GO:0022832 voltage-gated channel activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022843 voltage-gated cation channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030551 cyclic nucleotide binding IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031667 response to nutrient levels IEP Neighborhood
BP GO:0031668 cellular response to extracellular stimulus IEP Neighborhood
BP GO:0031669 cellular response to nutrient levels IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP Neighborhood
BP GO:0042594 response to starvation IEP Neighborhood
MF GO:0043765 T/G mismatch-specific endonuclease activity IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
MF GO:0051119 sugar transmembrane transporter activity IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0055072 iron ion homeostasis IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0071496 cellular response to external stimulus IEP Neighborhood
BP GO:0080187 floral organ senescence IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0099094 ligand-gated cation channel activity IEP Neighborhood
BP GO:1901135 carbohydrate derivative metabolic process IEP Neighborhood
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
BP GO:2000027 regulation of animal organ morphogenesis IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 95 420
No external refs found!