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  5. Gb_28999

Gb_28999


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 375.0)


Gene families : OG0001636 (Archaeplastida) Phylogenetic Tree(s): OG0001636_tree ,
OG_05_0001022 (LandPlants) Phylogenetic Tree(s): OG_05_0001022_tree ,
OG_06_0000515 (SeedPlants) Phylogenetic Tree(s): OG_06_0000515_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_28999
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Gb_01199 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_01732 No alias no hits & (original description: none) 0.19 Archaeplastida
Gb_01798 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_05178 No alias no hits & (original description: none) 0.09 Archaeplastida
Gb_06982 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_09472 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 Archaeplastida
Gb_14007 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_15515 No alias no hits & (original description: none) 0.1 Archaeplastida
Gb_17944 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_18111 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_19496 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_19601 No alias no hits & (original description: none) 0.14 Archaeplastida
Gb_20099 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_24913 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_26216 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_26792 No alias no hits & (original description: none) 0.1 Archaeplastida
Gb_27662 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.09 Archaeplastida
Gb_27706 No alias no hits & (original description: none) 0.12 Archaeplastida
Gb_29655 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.15 Archaeplastida
Gb_33437 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_38173 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.21 Archaeplastida
Gb_39190 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.13 Archaeplastida
Gb_40231 No alias no hits & (original description: none) 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!