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  5. Gb_29261

Gb_29261


Description : histone chaperone (SPT6). component SPT6 of SPT6-IWS1 transcription elongation complex


Gene families : OG0003491 (Archaeplastida) Phylogenetic Tree(s): OG0003491_tree ,
OG_05_0005087 (LandPlants) Phylogenetic Tree(s): OG_05_0005087_tree ,
OG_06_0005020 (SeedPlants) Phylogenetic Tree(s): OG_06_0005020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_29261
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00136890 evm_27.TU.AmTr_v1... Chromatin organisation.histone chaperone... 0.03 Archaeplastida
AT1G65440 GTB1 global transcription factor group B1 0.07 Archaeplastida
Cpa|evm.model.tig00001486.8 No alias Chromatin organisation.histone chaperone... 0.04 Archaeplastida
Cre09.g403182 No alias Chromatin organisation.histone chaperone... 0.05 Archaeplastida
GSVIVT01025815001 No alias Chromatin organisation.histone chaperone... 0.05 Archaeplastida
LOC_Os05g41510.1 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.03 Archaeplastida
MA_13648g0020 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.05 Archaeplastida
Mp2g25720.1 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.07 Archaeplastida
Pp3c5_23930V3.1 No alias global transcription factor group B1 0.06 Archaeplastida
Pp3c5_24480V3.1 No alias global transcription factor group B1 0.04 Archaeplastida
Smo164675 No alias Chromatin organisation.histone chaperone... 0.03 Archaeplastida
Solyc10g081020.2.1 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.02 Archaeplastida
Zm00001e032018_P003 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR028231 Spt6_YqgF 752 907
IPR028083 Spt6_acidic_N_dom 31 124
IPR028088 Spt6_HTH_DNA-bd_dom 318 436
IPR035420 Spt6_SH2 1242 1449
IPR032706 Spt6_HHH 911 1013
No external refs found!