Gb_29350

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 141.0)

Gene families : OG0000364 (Archaeplastida) Phylogenetic Tree(s): OG0000364_tree ,
OG_05_0000134 (LandPlants) Phylogenetic Tree(s): OG_05_0000134_tree ,
OG_06_0000108 (SeedPlants) Phylogenetic Tree(s): OG_06_0000108_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_29350
Cluster	HCCA: Cluster_61

Target	Alias	Description	ECC score	Gene Family Method
Gb_00288	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_00434	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_05523	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_06034	No alias	no hits & (original description: none)	0.01	Archaeplastida
Gb_06978	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_08666	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	Archaeplastida
Gb_10322	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_10464	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_15820	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_16799	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.07	Archaeplastida
Gb_24597	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	Archaeplastida
Gb_26878	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_26975	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_27666	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_27945	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_29546	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_29919	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_30261	No alias	no hits & (original description: none)	0.05	Archaeplastida
Gb_30314	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_30317	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_33182	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.01	Archaeplastida
Gb_33414	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_37606	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.04	Archaeplastida
Gb_37666	No alias	no hits & (original description: none)	0.01	Archaeplastida
Gb_38048	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_38122	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Gb_39185	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_40384	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_40566	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_40853	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_41697	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.06	Archaeplastida
Pp3c6_10950V3.1	No alias	No annotation	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
MF	GO:0004420	hydroxymethylglutaryl-CoA reductase (NADPH) activity	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
MF	GO:0010333	terpene synthase activity	IEP	Neighborhood
BP	GO:0015936	coenzyme A metabolic process	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016829	lyase activity	IEP	Neighborhood
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Neighborhood
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
CC	GO:0046658	anchored component of plasma membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	66	167
IPR025724	GAG-pre-integrase_dom	3	52

External Links

No external refs found!

Gb_29350

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation