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  5. AT2G42440

AT2G42440


Description : Lateral organ boundaries (LOB) domain family protein


Gene families : OG0000938 (Archaeplastida) Phylogenetic Tree(s): OG0000938_tree ,
OG_05_0000559 (LandPlants) Phylogenetic Tree(s): OG_05_0000559_tree ,
OG_06_0000336 (SeedPlants) Phylogenetic Tree(s): OG_06_0000336_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G42440
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
AT2G42430 LBD16, ASL18 lateral organ boundaries-domain 16 0.02 Archaeplastida
AT2G45410 LBD19 LOB domain-containing protein 19 0.06 Archaeplastida
AT3G03760 LBD20 LOB domain-containing protein 20 0.04 Archaeplastida
AT4G00220 LBD30, JLO Lateral organ boundaries (LOB) domain family protein 0.03 Archaeplastida
GSVIVT01027620001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
Gb_02663 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os02g57490.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
LOC_Os03g05500.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
LOC_Os03g14270.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os10g07510.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_101817g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_8060019g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_962403g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Solyc01g091420.2.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc06g083930.2.1 No alias transcription factor (AS2/LOB) 0.09 Archaeplastida
Solyc09g066260.4.1 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Solyc09g066270.3.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Zm00001e000391_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e001031_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e042347_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e042443_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e042448_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0001666 response to hypoxia IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
BP GO:0009061 anaerobic respiration IEP Neighborhood
BP GO:0009403 toxin biosynthetic process IEP Neighborhood
BP GO:0009638 phototropism IEP Neighborhood
BP GO:0009700 indole phytoalexin biosynthetic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009741 response to brassinosteroid IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009830 cell wall modification involved in abscission IEP Neighborhood
BP GO:0009870 defense response signaling pathway, resistance gene-dependent IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010022 meristem determinacy IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010065 primary meristem tissue development IEP Neighborhood
BP GO:0010067 procambium histogenesis IEP Neighborhood
BP GO:0010087 phloem or xylem histogenesis IEP Neighborhood
BP GO:0010089 xylem development IEP Neighborhood
BP GO:0010101 post-embryonic root morphogenesis IEP Neighborhood
BP GO:0010102 lateral root morphogenesis IEP Neighborhood
BP GO:0010120 camalexin biosynthetic process IEP Neighborhood
BP GO:0010252 auxin homeostasis IEP Neighborhood
MF GO:0010279 indole-3-acetic acid amido synthetase activity IEP Neighborhood
MF GO:0010297 heteropolysaccharide binding IEP Neighborhood
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Neighborhood
BP GO:0010432 bract development IEP Neighborhood
MF GO:0010436 carotenoid dioxygenase activity IEP Neighborhood
BP GO:0010451 floral meristem growth IEP Neighborhood
BP GO:0010582 floral meristem determinacy IEP Neighborhood
BP GO:0010583 response to cyclopentenone IEP Neighborhood
BP GO:0014070 response to organic cyclic compound IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
BP GO:0035266 meristem growth IEP Neighborhood
BP GO:0036293 response to decreased oxygen levels IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042762 regulation of sulfur metabolic process IEP Neighborhood
BP GO:0044277 cell wall disassembly IEP Neighborhood
MF GO:0045549 9-cis-epoxycarotenoid dioxygenase activity IEP Neighborhood
BP GO:0046217 indole phytoalexin metabolic process IEP Neighborhood
BP GO:0048367 shoot system development IEP Neighborhood
BP GO:0048508 embryonic meristem development IEP Neighborhood
BP GO:0048527 lateral root development IEP Neighborhood
BP GO:0048528 post-embryonic root development IEP Neighborhood
BP GO:0048731 system development IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051176 positive regulation of sulfur metabolic process IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0052314 phytoalexin metabolic process IEP Neighborhood
BP GO:0052315 phytoalexin biosynthetic process IEP Neighborhood
BP GO:0052317 camalexin metabolic process IEP Neighborhood
BP GO:0052318 regulation of phytoalexin metabolic process IEP Neighborhood
BP GO:0052319 regulation of phytoalexin biosynthetic process IEP Neighborhood
BP GO:0052320 positive regulation of phytoalexin metabolic process IEP Neighborhood
BP GO:0052322 positive regulation of phytoalexin biosynthetic process IEP Neighborhood
BP GO:0070482 response to oxygen levels IEP Neighborhood
BP GO:0080086 stamen filament development IEP Neighborhood
BP GO:0090506 axillary shoot meristem initiation IEP Neighborhood
BP GO:0090696 post-embryonic plant organ development IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1900376 regulation of secondary metabolite biosynthetic process IEP Neighborhood
BP GO:1900378 positive regulation of secondary metabolite biosynthetic process IEP Neighborhood
BP GO:1901182 regulation of camalexin biosynthetic process IEP Neighborhood
BP GO:1901183 positive regulation of camalexin biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 7 105
No external refs found!