AT2G42940

Description : Predicted AT-hook DNA-binding family protein

Gene families : OG0000411 (Archaeplastida) Phylogenetic Tree(s): OG0000411_tree ,
OG_05_0000205 (LandPlants) Phylogenetic Tree(s): OG_05_0000205_tree ,
OG_06_0000150 (SeedPlants) Phylogenetic Tree(s): OG_06_0000150_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G42940
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AT4G22810	No alias	Predicted AT-hook DNA-binding family protein	0.03	Archaeplastida
GSVIVT01016497001	No alias	AT-hook motif nuclear-localized protein 15...	0.04	Archaeplastida
GSVIVT01019932001	No alias	AT-hook motif nuclear-localized protein 24...	0.04	Archaeplastida
GSVIVT01036210001	No alias	AT-hook motif nuclear-localized protein 19...	0.03	Archaeplastida
LOC_Os08g44910.1	No alias	AT-hook motif nuclear-localized protein 20...	0.04	Archaeplastida
Solyc07g056300.1.1	No alias	AT-hook motif nuclear-localized protein 16...	0.03	Archaeplastida
Zm00001e003878_P001	No alias	AT-hook motif nuclear-localized protein 20...	0.03	Archaeplastida
Zm00001e014298_P001	No alias	AT-hook motif nuclear-localized protein 22...	0.04	Archaeplastida
Zm00001e016254_P001	No alias	AT-hook motif nuclear-localized protein 20...	0.03	Archaeplastida
Zm00001e022037_P001	No alias	AT-hook motif nuclear-localized protein 20...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IMP	Interproscan
BP	GO:0010528	regulation of transposition	None	Extended
BP	GO:0010529	negative regulation of transposition	IMP	Interproscan
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010638	positive regulation of organelle organization	None	Extended
BP	GO:0010639	negative regulation of organelle organization	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031057	negative regulation of histone modification	None	Extended
BP	GO:0031058	positive regulation of histone modification	None	Extended
BP	GO:0031060	regulation of histone methylation	None	Extended
BP	GO:0031062	positive regulation of histone methylation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031400	negative regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
MF	GO:0031490	chromatin DNA binding	IDA	Interproscan
BP	GO:0032268	regulation of cellular protein metabolic process	None	Extended
BP	GO:0032269	negative regulation of cellular protein metabolic process	None	Extended
BP	GO:0032270	positive regulation of cellular protein metabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	None	Extended
BP	GO:0035065	regulation of histone acetylation	None	Extended
BP	GO:0035067	negative regulation of histone acetylation	IMP	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051129	negative regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051570	regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051574	positive regulation of histone H3-K9 methylation	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1900109	regulation of histone H3-K9 dimethylation	None	Extended
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IMP	Interproscan
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901983	regulation of protein acetylation	None	Extended
BP	GO:1901984	negative regulation of protein acetylation	None	Extended
BP	GO:1902275	regulation of chromatin organization	None	Extended
BP	GO:1905268	negative regulation of chromatin organization	None	Extended
BP	GO:1905269	positive regulation of chromatin organization	None	Extended
BP	GO:2000756	regulation of peptidyl-lysine acetylation	None	Extended
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	None	Extended
BP	GO:2001251	negative regulation of chromosome organization	None	Extended
BP	GO:2001252	positive regulation of chromosome organization	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004407	histone deacetylase activity	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
BP	GO:0006863	purine nucleobase transport	IEP	Neighborhood
BP	GO:0009820	alkaloid metabolic process	IEP	Neighborhood
BP	GO:0009821	alkaloid biosynthetic process	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010208	pollen wall assembly	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010584	pollen exine formation	IEP	Neighborhood
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	Neighborhood
BP	GO:0015851	nucleobase transport	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
MF	GO:0016843	amine-lyase activity	IEP	Neighborhood
MF	GO:0016844	strictosidine synthase activity	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
MF	GO:0033558	protein deacetylase activity	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
BP	GO:0048229	gametophyte development	IEP	Neighborhood
BP	GO:0048577	negative regulation of short-day photoperiodism, flowering	IEP	Neighborhood
BP	GO:0048587	regulation of short-day photoperiodism, flowering	IEP	Neighborhood
BP	GO:0048658	anther wall tapetum development	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0080110	sporopollenin biosynthetic process	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005175	PPC_dom	84	193

External Links

No external refs found!

AT2G42940

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation