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  5. Gb_30756

Gb_30756


Description : no hits & (original description: none)


Gene families : OG0004975 (Archaeplastida) Phylogenetic Tree(s): OG0004975_tree ,
OG_05_0004978 (LandPlants) Phylogenetic Tree(s): OG_05_0004978_tree ,
OG_06_0004361 (SeedPlants) Phylogenetic Tree(s): OG_06_0004361_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30756
Cluster HCCA: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00203240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 Archaeplastida
AMTR_s00354p00009120 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 Archaeplastida
AT3G48500 PTAC10, PDE312 Nucleic acid-binding, OB-fold-like protein 0.09 Archaeplastida
Cre07.g348500 No alias No description available 0.03 Archaeplastida
GSVIVT01008490001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 Archaeplastida
LOC_Os01g67570.1 No alias PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.09 Archaeplastida
MA_10428299g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10435142g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_14025g0020 No alias PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.05 Archaeplastida
Mp4g08250.1 No alias PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.08 Archaeplastida
Pp3c18_13570V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.08 Archaeplastida
Smo438805 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.06 Archaeplastida
Solyc03g111050.3.1 No alias PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.11 Archaeplastida
Zm00001e028549_P001 No alias PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004820 glycine-tRNA ligase activity IEP Neighborhood
MF GO:0004832 valine-tRNA ligase activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006426 glycyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006438 valyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!