Gb_31686

Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 254.0)

Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0000380 (LandPlants) Phylogenetic Tree(s): OG_05_0000380_tree ,
OG_06_0002279 (SeedPlants) Phylogenetic Tree(s): OG_06_0002279_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_31686
Cluster	HCCA: Cluster_175

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00265700	evm_27.TU.AmTr_v1...	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
AMTR_s00033p00116200	evm_27.TU.AmTr_v1...	KH domain-containing protein HEN4 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01011439001	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
GSVIVT01012514001	No alias	KH domain-containing protein HEN4 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01018244001	No alias	RNA-binding KH domain-containing protein PEPPER...	0.02	Archaeplastida
GSVIVT01021523001	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01031037001	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis thaliana	0.05	Archaeplastida
LOC_Os06g23460.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.02	Archaeplastida
LOC_Os09g32300.1	No alias	KH domain-containing protein HEN4 OS=Arabidopsis...	0.02	Archaeplastida
MA_10429211g0010	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
MA_10430861g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.11	Archaeplastida
MA_10433640g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
MA_108374g0010	No alias	KH domain-containing protein HEN4 OS=Arabidopsis...	0.02	Archaeplastida
MA_12604g0010	No alias	RNA-binding KH domain-containing protein RCF3...	0.04	Archaeplastida
MA_20325g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
MA_3715g0020	No alias	RNA-binding KH domain-containing protein RCF3...	0.07	Archaeplastida
MA_6622g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.06	Archaeplastida
MA_71572g0010	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.03	Archaeplastida
Solyc02g067210.3.1	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.06	Archaeplastida
Solyc03g034200.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.05	Archaeplastida
Solyc04g077060.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.04	Archaeplastida
Solyc05g007810.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.04	Archaeplastida
Solyc08g048500.3.1	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.05	Archaeplastida
Solyc12g055780.3.1	No alias	RNA-binding KH domain-containing protein RCF3...	0.04	Archaeplastida
Zm00001e001825_P001	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e037033_P001	No alias	RNA-binding KH domain-containing protein RCF3...	0.03	Archaeplastida
Zm00001e039986_P003	No alias	KH domain-containing protein At4g18375 OS=Arabidopsis...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000012	single strand break repair	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
CC	GO:0032040	small-subunit processome	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004088	KH_dom_type_1	49	101
IPR004088	KH_dom_type_1	342	390
IPR004088	KH_dom_type_1	191	258
IPR004088	KH_dom_type_1	425	493
IPR004088	KH_dom_type_1	628	691

External Links

No external refs found!

Gb_31686

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation