1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_32672

Gb_32672


Description : rDNA chromatin transcription factor (NCL)


Gene families : OG0003954 (Archaeplastida) Phylogenetic Tree(s): OG0003954_tree ,
OG_05_0003386 (LandPlants) Phylogenetic Tree(s): OG_05_0003386_tree ,
OG_06_0003593 (SeedPlants) Phylogenetic Tree(s): OG_06_0003593_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_32672
Cluster HCCA: Cluster_335

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00090110 evm_27.TU.AmTr_v1... RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.02 Archaeplastida
AT1G48920 PARL1, ATNUC-L1, NUC-L1 nucleolin like 1 0.08 Archaeplastida
Cre06.g275100 No alias RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.05 Archaeplastida
GSVIVT01012042001 No alias RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.08 Archaeplastida
LOC_Os04g52960.1 No alias rDNA chromatin transcription factor (NCL) 0.06 Archaeplastida
LOC_Os08g09350.1 No alias rDNA chromatin transcription factor (NCL) 0.11 Archaeplastida
MA_10433238g0010 No alias rDNA chromatin transcription factor (NCL) 0.03 Archaeplastida
MA_11380g0030 No alias rDNA chromatin transcription factor (NCL) 0.06 Archaeplastida
Mp1g21390.1 No alias rDNA chromatin transcription factor (NCL) 0.05 Archaeplastida
Pp3c12_23930V3.1 No alias nucleolin like 2 0.06 Archaeplastida
Pp3c1_36300V3.1 No alias nucleolin like 2 0.02 Archaeplastida
Pp3c4_1560V3.1 No alias nucleolin like 2 0.03 Archaeplastida
Smo234317 No alias RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.05 Archaeplastida
Solyc02g014310.4.1 No alias rDNA chromatin transcription factor (NCL) 0.05 Archaeplastida
Zm00001e004617_P003 No alias rDNA chromatin transcription factor (NCL) 0.03 Archaeplastida
Zm00001e021609_P004 No alias rDNA chromatin transcription factor (NCL) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 506 562
IPR000504 RRM_dom 698 769
No external refs found!