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  5. Gb_32960

Gb_32960


Description : component Fip1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0002503 (Archaeplastida) Phylogenetic Tree(s): OG0002503_tree ,
OG_05_0002298 (LandPlants) Phylogenetic Tree(s): OG_05_0002298_tree ,
OG_06_0003535 (SeedPlants) Phylogenetic Tree(s): OG_06_0003535_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_32960
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
AT3G66652 No alias fip1 motif-containing protein 0.04 Archaeplastida
AT5G58040 FIP1[V],... homolog of yeast FIP1 [V] 0.09 Archaeplastida
Cre17.g745547 No alias No description available 0.02 Archaeplastida
MA_10427720g0010 No alias FIP1[V]-like protein OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_11233g0040 No alias FIP1[V]-like protein OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp5g14310.1 No alias component Fip1 of Cleavage and Polyadenylation... 0.09 Archaeplastida
Pp3c11_22610V3.1 No alias homolog of yeast FIP1 [V] 0.04 Archaeplastida
Pp3c7_2840V3.1 No alias homolog of yeast FIP1 [V] 0.03 Archaeplastida
Solyc07g005320.3.1 No alias component Fip1 of Cleavage and Polyadenylation... 0.03 Archaeplastida
Zm00001e005530_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e012129_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR007854 Fip1 498 540
No external refs found!