Gb_33063

Description : component SRm160 of RNA quality control Exon Junction complex

Gene families : OG0004040 (Archaeplastida) Phylogenetic Tree(s): OG0004040_tree ,
OG_05_0003861 (LandPlants) Phylogenetic Tree(s): OG_05_0003861_tree ,
OG_06_0005016 (SeedPlants) Phylogenetic Tree(s): OG_06_0005016_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_33063
Cluster	HCCA: Cluster_68

Target	Alias	Description	ECC score	Gene Family Method
AT2G29210	No alias	splicing factor PWI domain-containing protein	0.04	Archaeplastida
Cre16.g678050	No alias	RNA processing.RNA quality control Exon Junction complex...	0.03	Archaeplastida
GSVIVT01024906001	No alias	RNA processing.RNA quality control Exon Junction complex...	0.05	Archaeplastida
MA_1065g0010	No alias	component SRm160 of RNA quality control Exon Junction complex	0.07	Archaeplastida
Mp8g09170.1	No alias	component SRm160 of RNA quality control Exon Junction complex	0.06	Archaeplastida
Pp3c3_30240V3.1	No alias	splicing factor PWI domain-containing protein	0.02	Archaeplastida
Solyc09g030390.3.1	No alias	component SRm160 of RNA quality control Exon Junction complex	0.04	Archaeplastida
Zm00001e001194_P001	No alias	component SRm160 of RNA quality control Exon Junction complex	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002483	PWI_dom	46	115

External Links

No external refs found!