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  5. Gb_33076

Gb_33076


Description : chromatin remodeling factor (Ris1)


Gene families : OG0000572 (Archaeplastida) Phylogenetic Tree(s): OG0000572_tree ,
OG_05_0002524 (LandPlants) Phylogenetic Tree(s): OG_05_0002524_tree ,
OG_06_0002344 (SeedPlants) Phylogenetic Tree(s): OG_06_0002344_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33076
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00226100 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
AT1G50410 No alias SNF2 domain-containing protein / helicase... 0.06 Archaeplastida
AT1G61140 EDA16 SNF2 domain-containing protein / helicase... 0.04 Archaeplastida
AT5G05130 No alias DNA/RNA helicase protein 0.02 Archaeplastida
Cpa|evm.model.tig00021014.10 No alias DNA repair protein RAD5A OS=Arabidopsis thaliana 0.03 Archaeplastida
Cpa|evm.model.tig00021293.7 No alias No description available 0.01 Archaeplastida
GSVIVT01034370001 No alias Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
LOC_Os01g57110.1 No alias chromatin remodeling factor (Ris1) 0.05 Archaeplastida
LOC_Os02g32570.1 No alias chromatin remodeling factor (Rad5) 0.02 Archaeplastida
LOC_Os07g44800.1 No alias chromatin remodeling factor (Rad5) 0.03 Archaeplastida
LOC_Os08g08220.1 No alias chromatin remodeling factor (Rad5). chromatin remodeling... 0.06 Archaeplastida
MA_4534g0010 No alias Helicase-like transcription factor CHR28 OS=Arabidopsis... 0.05 Archaeplastida
MA_8870g0010 No alias Helicase-like transcription factor CHR28 OS=Arabidopsis... 0.03 Archaeplastida
Mp8g05230.1 No alias chromatin remodeling factor (Ris1) 0.03 Archaeplastida
Pp3c21_12900V3.1 No alias SNF2 domain-containing protein / helicase... 0.06 Archaeplastida
Smo429547 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Solyc02g050280.4.1 No alias chromatin remodeling factor (Ris1) 0.04 Archaeplastida
Solyc12g020110.2.1 No alias chromatin remodeling factor (Rad5) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0019208 phosphatase regulator activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019888 protein phosphatase regulator activity IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 572 963
IPR001650 Helicase_C 1160 1259
No external refs found!