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  5. Gb_33197

Gb_33197


Description : subunit 1 of Pol II RNA polymerase


Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0005403 (LandPlants) Phylogenetic Tree(s): OG_05_0005403_tree ,
OG_06_0005891 (SeedPlants) Phylogenetic Tree(s): OG_06_0005891_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33197
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00152770 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.13 Archaeplastida
AT4G35800 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.1 Archaeplastida
Cpa|evm.model.tig00000241.15 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 Archaeplastida
Cpa|evm.model.tig00022075.5 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
Cpa|evm.model.tig00022075.6 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.06 Archaeplastida
Cre03.g165750 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
GSVIVT01008740001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.08 Archaeplastida
GSVIVT01013491001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
GSVIVT01019869001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.05 Archaeplastida
LOC_Os02g05880.1 No alias subunit 1 of Pol V RNA polymerase 0.03 Archaeplastida
LOC_Os04g41490.1 No alias subunit 1 of Pol III RNA polymerase 0.04 Archaeplastida
LOC_Os05g05860.1 No alias subunit 1 of Pol II RNA polymerase 0.01 Archaeplastida
MA_10436091g0010 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis... 0.1 Archaeplastida
MA_8544g0010 No alias subunit 1 of Pol II RNA polymerase 0.09 Archaeplastida
Mp3g15530.1 No alias subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V... 0.09 Archaeplastida
Mp4g14340.1 No alias subunit 1 of Pol II RNA polymerase 0.05 Archaeplastida
Pp3c15_5270V3.1 No alias nuclear RNA polymerase D1B 0.05 Archaeplastida
Pp3c17_4860V3.1 No alias nuclear RNA polymerase C1 0.04 Archaeplastida
Pp3c1_32300V3.1 No alias RNA polymerase II large subunit 0.09 Archaeplastida
Smo110201 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.07 Archaeplastida
Solyc01g096390.4.1 No alias subunit 1 of Pol V RNA polymerase 0.05 Archaeplastida
Solyc08g080220.3.1 No alias subunit 1 of Pol IV RNA polymerase 0.02 Archaeplastida
Zm00001e040236_P001 No alias subunit 1 of Pol II RNA polymerase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007075 RNA_pol_Rpb1_6 426 610
IPR007081 RNA_pol_Rpb1_5 360 950
IPR000722 RNA_pol_asu 1 55
IPR007073 RNA_pol_Rpb1_7 695 829
IPR000684 RNA_pol_II_repeat_euk 1080 1093
IPR000684 RNA_pol_II_repeat_euk 1206 1219
IPR000684 RNA_pol_II_repeat_euk 1164 1177
IPR000684 RNA_pol_II_repeat_euk 1136 1149
IPR000684 RNA_pol_II_repeat_euk 1171 1184
IPR000684 RNA_pol_II_repeat_euk 1262 1275
IPR000684 RNA_pol_II_repeat_euk 1178 1191
IPR000684 RNA_pol_II_repeat_euk 1094 1107
IPR000684 RNA_pol_II_repeat_euk 1220 1233
IPR000684 RNA_pol_II_repeat_euk 1282 1295
IPR000684 RNA_pol_II_repeat_euk 1150 1163
IPR000684 RNA_pol_II_repeat_euk 1192 1205
IPR000684 RNA_pol_II_repeat_euk 1122 1135
IPR000684 RNA_pol_II_repeat_euk 1129 1142
IPR000684 RNA_pol_II_repeat_euk 1101 1114
IPR000684 RNA_pol_II_repeat_euk 1234 1247
IPR000684 RNA_pol_II_repeat_euk 1108 1121
IPR000684 RNA_pol_II_repeat_euk 1143 1156
IPR000684 RNA_pol_II_repeat_euk 1157 1170
IPR000684 RNA_pol_II_repeat_euk 1087 1100
IPR000684 RNA_pol_II_repeat_euk 1310 1323
IPR000684 RNA_pol_II_repeat_euk 1115 1128
IPR007083 RNA_pol_Rpb1_4 249 353
IPR007066 RNA_pol_Rpb1_3 59 222
No external refs found!