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Gb_33699


Description : Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana (sp|q5g1s8|pp241_arath : 1358.0)


Gene families : OG0006433 (Archaeplastida) Phylogenetic Tree(s): OG0006433_tree ,
OG_05_0005096 (LandPlants) Phylogenetic Tree(s): OG_05_0005096_tree ,
OG_06_0005733 (SeedPlants) Phylogenetic Tree(s): OG_06_0005733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33699
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
AT3G18110 EMB1270 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
LOC_Os06g09880.1 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.06 Archaeplastida
MA_712594g0010 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.04 Archaeplastida
Solyc03g096830.4.1 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.08 Archaeplastida
Zm00001e036242_P002 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 308 367
IPR002885 Pentatricopeptide_repeat 553 600
IPR002885 Pentatricopeptide_repeat 1108 1166
IPR002885 Pentatricopeptide_repeat 1038 1099
IPR002885 Pentatricopeptide_repeat 915 943
IPR002885 Pentatricopeptide_repeat 949 978
IPR002885 Pentatricopeptide_repeat 777 799
IPR002885 Pentatricopeptide_repeat 392 421
IPR002885 Pentatricopeptide_repeat 809 852
IPR002885 Pentatricopeptide_repeat 980 1027
IPR002885 Pentatricopeptide_repeat 425 472
IPR002885 Pentatricopeptide_repeat 497 541
IPR002885 Pentatricopeptide_repeat 249 293
No external refs found!