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  5. Gb_33899

Gb_33899


Description : methyltransferase component Nop1/fibrillarin of snoRNP rRNA methylation complex


Gene families : OG0003455 (Archaeplastida) Phylogenetic Tree(s): OG0003455_tree ,
OG_05_0003421 (LandPlants) Phylogenetic Tree(s): OG_05_0003421_tree ,
OG_06_0006079 (SeedPlants) Phylogenetic Tree(s): OG_06_0006079_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33899
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00218020 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.07 Archaeplastida
AMTR_s00099p00093470 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.02 Archaeplastida
AT4G25630 FIB2, ATFIB2 fibrillarin 2 0.11 Archaeplastida
AT5G52470 FIB1, ATFIB1,... fibrillarin 1 0.07 Archaeplastida
Cpa|evm.model.tig00001049.16 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 Archaeplastida
Cre02.g077300 No alias RNA processing.RNA modification.rRNA/tRNA... 0.04 Archaeplastida
GSVIVT01028887001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.08 Archaeplastida
LOC_Os02g57590.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.04 Archaeplastida
LOC_Os05g08360.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.08 Archaeplastida
MA_124463g0010 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.11 Archaeplastida
Mp2g12880.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.02 Archaeplastida
Pp3c16_1450V3.1 No alias fibrillarin 2 0.01 Archaeplastida
Pp3c5_11200V3.1 No alias fibrillarin 2 0.03 Archaeplastida
Pp3c6_12420V3.1 No alias fibrillarin 2 0.03 Archaeplastida
Smo171051 No alias RNA processing.RNA modification.rRNA/tRNA... 0.04 Archaeplastida
Solyc03g025270.3.1 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.08 Archaeplastida
Zm00001e023572_P001 No alias methyltransferase component Nop1/fibrillarin of snoRNP... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000692 Fibrillarin 75 302
No external refs found!