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  5. Gb_33909

Gb_33909


Description : component MSH2 of MSH2-x mismatch repair heterodimers


Gene families : OG0004906 (Archaeplastida) Phylogenetic Tree(s): OG0004906_tree ,
OG_05_0005790 (LandPlants) Phylogenetic Tree(s): OG_05_0005790_tree ,
OG_06_0010054 (SeedPlants) Phylogenetic Tree(s): OG_06_0010054_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_33909
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00236950 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.mismatch... 0.05 Archaeplastida
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 0.05 Archaeplastida
Cpa|evm.model.tig00001224.8 No alias DNA damage response.DNA repair mechanisms.mismatch... 0.01 Archaeplastida
Cre01.g003463 No alias DNA mismatch repair protein MSH2 OS=Zea mays 0.05 Archaeplastida
LOC_Os05g19270.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.03 Archaeplastida
MA_59360g0010 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.09 Archaeplastida
Mp4g08420.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.04 Archaeplastida
Pp3c22_850V3.1 No alias MUTS homolog 2 0.06 Archaeplastida
Solyc06g069230.3.1 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.03 Archaeplastida
Zm00001e035455_P001 No alias component MSH2 of MSH2-x mismatch repair heterodimers 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
BP GO:0000726 non-recombinational repair IEP Neighborhood
CC GO:0000808 origin recognition complex IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005664 nuclear origin of replication recognition complex IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 659 860
IPR007696 DNA_mismatch_repair_MutS_core 296 603
IPR007695 DNA_mismatch_repair_MutS-lik_N 20 125
IPR007861 DNA_mismatch_repair_MutS_clamp 465 562
IPR007860 DNA_mmatch_repair_MutS_con_dom 141 280
No external refs found!