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  5. Gb_35116

Gb_35116


Description : transcription factor (HD-ZIP I/II)


Gene families : OG0000146 (Archaeplastida) Phylogenetic Tree(s): OG0000146_tree ,
OG_05_0000061 (LandPlants) Phylogenetic Tree(s): OG_05_0000061_tree ,
OG_06_0000101 (SeedPlants) Phylogenetic Tree(s): OG_06_0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35116
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT2G22430 HB6, ATHB6 homeobox protein 6 0.04 Archaeplastida
AT3G61890 HB-12, ATHB-12, ATHB12 homeobox 12 0.03 Archaeplastida
GSVIVT01019655001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
GSVIVT01020078001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
LOC_Os02g43330.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
LOC_Os03g07450.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
LOC_Os03g08960.1 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
LOC_Os03g10210.1 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
LOC_Os04g45810.1 No alias transcription factor (HD-ZIP I/II) 0.02 Archaeplastida
MA_9241385g0010 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Pp3c12_21760V3.1 No alias homeobox protein 16 0.03 Archaeplastida
Pp3c14_21680V3.1 No alias homeobox 3 0.04 Archaeplastida
Pp3c16_21410V3.1 No alias homeobox 1 0.02 Archaeplastida
Pp3c1_37070V3.1 No alias homeobox protein 16 0.02 Archaeplastida
Pp3c5_27150V3.1 No alias homeobox protein 16 0.03 Archaeplastida
Pp3c8_440V3.1 No alias homeobox 3 0.04 Archaeplastida
Solyc02g085630.3.1 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
Solyc03g082550.3.1 No alias transcription factor (HD-ZIP I/II) 0.05 Archaeplastida
Solyc04g005800.3.1 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
Solyc05g006980.3.1 No alias transcription factor (HD-ZIP I/II) 0.04 Archaeplastida
Solyc06g053220.3.1 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida
Zm00001e010218_P001 No alias transcription factor (HD-ZIP I/II) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR003106 Leu_zip_homeo 128 166
IPR001356 Homeobox_dom 74 126
No external refs found!