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  5. Gb_35979

Gb_35979


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 472.0)


Gene families : OG0000874 (Archaeplastida) Phylogenetic Tree(s): OG0000874_tree ,
OG_05_0000126 (LandPlants) Phylogenetic Tree(s): OG_05_0000126_tree ,
OG_06_0000049 (SeedPlants) Phylogenetic Tree(s): OG_06_0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_35979
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Gb_00103 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_01356 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_01791 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_02742 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_03910 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_07329 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 Archaeplastida
Gb_08813 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.13 Archaeplastida
Gb_10984 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_13579 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.09 Archaeplastida
Gb_13962 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_14528 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_15173 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_17516 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.17 Archaeplastida
Gb_20680 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_24463 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_24932 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.21 Archaeplastida
Gb_25674 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 Archaeplastida
Gb_27577 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.16 Archaeplastida
Gb_29931 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.21 Archaeplastida
Gb_30240 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_33326 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_33563 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 Archaeplastida
Gb_33581 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 Archaeplastida
Gb_34206 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 Archaeplastida
Gb_34518 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 Archaeplastida
Gb_35549 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_36149 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.09 Archaeplastida
Gb_38553 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013103 RVT_2 550 791
No external refs found!