Gb_36311

Description : transcription factor (mTERF). mTERF4 plastidial RNA splicing factor. mTERF mitochondrial RNA splicing factor

Gene families : OG0001159 (Archaeplastida) Phylogenetic Tree(s): OG0001159_tree ,
OG_05_0001847 (LandPlants) Phylogenetic Tree(s): OG_05_0001847_tree ,
OG_06_0001563 (SeedPlants) Phylogenetic Tree(s): OG_06_0001563_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_36311
Cluster	HCCA: Cluster_202

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00234800	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
AMTR_s00025p00060270	evm_27.TU.AmTr_v1...	RNA processing.organelle machineries.RNA...	0.07	Archaeplastida
AT2G21710	EMB2219	Mitochondrial transcription termination factor family protein	0.05	Archaeplastida
AT4G02990	No alias	Mitochondrial transcription termination factor family protein	0.04	Archaeplastida
GSVIVT01011061001	No alias	RNA processing.organelle machineries.RNA...	0.06	Archaeplastida
GSVIVT01031970001	No alias	RNA biosynthesis.organelle...	0.07	Archaeplastida
LOC_Os02g54200.1	No alias	transcription factor (mTERF). mTERF mitochondrial RNA...	0.03	Archaeplastida
LOC_Os05g33500.1	No alias	transcription factor (mTERF). mTERF4 plastidial RNA...	0.03	Archaeplastida
MA_10211905g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_138082g0010	No alias	transcription factor (mTERF). mTERF mitochondrial RNA...	0.03	Archaeplastida
MA_15876g0010	No alias	transcription factor (mTERF). mTERF4 plastidial RNA...	0.04	Archaeplastida
MA_39589g0010	No alias	transcription factor (mTERF). mTERF4 plastidial RNA...	0.05	Archaeplastida
MA_78196g0010	No alias	transcription factor (mTERF). mTERF4 plastidial RNA...	0.02	Archaeplastida
Mp1g22560.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Pp3c1_25410V3.1	No alias	Mitochondrial transcription termination factor family protein	0.06	Archaeplastida
Zm00001e027106_P001	No alias	transcription factor (mTERF). mTERF4 plastidial RNA...	0.05	Archaeplastida
Zm00001e032771_P001	No alias	transcription factor (mTERF)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Neighborhood
BP	GO:0006353	DNA-templated transcription, termination	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
MF	GO:0035596	methylthiotransferase activity	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0050497	transferase activity, transferring alkylthio groups	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003690	MTERF	169	477

External Links

No external refs found!

Gb_36311

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation