Gb_36863

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 129.0)

Gene families : OG0005782 (Archaeplastida) Phylogenetic Tree(s): OG0005782_tree ,
OG_05_0004779 (LandPlants) Phylogenetic Tree(s): OG_05_0004779_tree ,
OG_06_0003962 (SeedPlants) Phylogenetic Tree(s): OG_06_0003962_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_36863
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
Gb_03541	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.25	Archaeplastida
Gb_12821	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Gb_13448	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.08	Archaeplastida
Gb_22556	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.05	Archaeplastida
Gb_32539	No alias	Retrovirus-related Pol polyprotein from transposon TNT...	0.03	Archaeplastida
Pp3c2_8510V3.1	No alias	No annotation	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	7	102

External Links

No external refs found!