AT3G02310 (AGL4, SEP2)


Aliases : AGL4, SEP2

Description : K-box region and MADS-box transcription factor family protein


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000791 (SeedPlants) Phylogenetic Tree(s): OG_06_0000791_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G02310
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00001p00270400 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00013p00103080 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00017p00244900 evm_27.TU.AmTr_v1... Floral homeotic protein PMADS 2 OS=Petunia hybrida 0.03 Archaeplastida
AMTR_s00021p00254030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
AMTR_s00047p00181740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00047p00190220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00066p00109320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00071p00193200 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00089p00081270 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00140p00045380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT4G24540 AGL24 AGAMOUS-like 24 0.04 Archaeplastida
AT5G62165 AGL42 AGAMOUS-like 42 0.03 Archaeplastida
GSVIVT01000802001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01008140001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01010221001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01010521001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01012249001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01015641001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01015649001 No alias No description available 0.03 Archaeplastida
GSVIVT01018446001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01027577001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01036549001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Gb_03068 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os01g10504.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os01g66030.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os01g66290.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os02g07430.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os02g45770.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os03g08754.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os05g11414.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g06750.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g23950.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os07g01820.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os10g39130.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os12g10540.3 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 Archaeplastida
MA_15122g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_211156g0010 No alias no description available(sp|q93xh4|mads1_vitvi : 152.0) 0.02 Archaeplastida
MA_333471g0010 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 Archaeplastida
MA_95674g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.03 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.03 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc01g093960.3.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc02g084630.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc02g089200.4.1 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
Solyc02g089210.4.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc03g006830.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.08 Archaeplastida
Solyc04g076280.4.1 No alias MADS-box protein SVP OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc05g015750.3.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc06g059970.4.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc06g064840.4.1 No alias no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.03 Archaeplastida
Solyc06g069430.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc07g055920.4.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.05 Archaeplastida
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc11g005120.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e012024_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e018811_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e019057_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e027031_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e035509_P002 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009827 plant-type cell wall modification RCA Interproscan
BP GO:0009860 pollen tube growth RCA Interproscan
BP GO:0009886 post-embryonic animal morphogenesis RCA Interproscan
BP GO:0009908 flower development NAS Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0010048 vernalization response RCA Interproscan
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light RCA Interproscan
BP GO:0048440 carpel development RCA Interproscan
BP GO:0048441 petal development RCA Interproscan
BP GO:0048443 stamen development RCA Interproscan
BP GO:0048481 plant ovule development IMP Interproscan
BP GO:0048481 plant ovule development RCA Interproscan
BP GO:0048507 meristem development RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0001708 cell fate specification IEP Neighborhood
BP GO:0003002 regionalization IEP Neighborhood
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Neighborhood
MF GO:0004467 long-chain fatty acid-CoA ligase activity IEP Neighborhood
MF GO:0004565 beta-galactosidase activity IEP Neighborhood
MF GO:0005496 steroid binding IEP Neighborhood
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006515 protein quality control for misfolded or incompletely synthesized proteins IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008142 oxysterol binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
CC GO:0009331 glycerol-3-phosphate dehydrogenase complex IEP Neighborhood
BP GO:0009413 response to flooding IEP Neighborhood
CC GO:0009503 thylakoid light-harvesting complex IEP Neighborhood
CC GO:0009517 PSII associated light-harvesting complex II IEP Neighborhood
BP GO:0009739 response to gibberellin IEP Neighborhood
BP GO:0009740 gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009900 dehiscence IEP Neighborhood
BP GO:0009911 positive regulation of flower development IEP Neighborhood
BP GO:0009913 epidermal cell differentiation IEP Neighborhood
BP GO:0009937 regulation of gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0009938 negative regulation of gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0009968 negative regulation of signal transduction IEP Neighborhood
BP GO:0010025 wax biosynthetic process IEP Neighborhood
BP GO:0010047 fruit dehiscence IEP Neighborhood
BP GO:0010091 trichome branching IEP Neighborhood
BP GO:0010093 specification of floral organ identity IEP Neighborhood
BP GO:0010117 photoprotection IEP Neighborhood
BP GO:0010143 cutin biosynthetic process IEP Neighborhood
BP GO:0010162 seed dormancy process IEP Neighborhood
BP GO:0010166 wax metabolic process IEP Neighborhood
CC GO:0010169 thioglucosidase complex IEP Neighborhood
MF GO:0010180 thioglucosidase binding IEP Neighborhood
BP GO:0010187 negative regulation of seed germination IEP Neighborhood
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Neighborhood
BP GO:0010229 inflorescence development IEP Neighborhood
BP GO:0010321 regulation of vegetative phase change IEP Neighborhood
BP GO:0010325 raffinose family oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0010358 leaf shaping IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010476 gibberellin mediated signaling pathway IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010648 negative regulation of cell communication IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0015645 fatty acid ligase activity IEP Neighborhood
BP GO:0016122 xanthophyll metabolic process IEP Neighborhood
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0017148 negative regulation of translation IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0022611 dormancy process IEP Neighborhood
BP GO:0023057 negative regulation of signaling IEP Neighborhood
BP GO:0030855 epithelial cell differentiation IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0031957 very long-chain fatty acid-CoA ligase activity IEP Neighborhood
BP GO:0032055 negative regulation of translation in response to stress IEP Neighborhood
BP GO:0032928 regulation of superoxide anion generation IEP Neighborhood
MF GO:0032934 sterol binding IEP Neighborhood
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0040034 regulation of development, heterochronic IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
CC GO:0042645 mitochondrial nucleoid IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0043555 regulation of translation in response to stress IEP Neighborhood
MF GO:0045551 cinnamyl-alcohol dehydrogenase activity IEP Neighborhood
BP GO:0045596 negative regulation of cell differentiation IEP Neighborhood
MF GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity IEP Neighborhood
BP GO:0048444 floral organ morphogenesis IEP Neighborhood
BP GO:0048446 petal morphogenesis IEP Neighborhood
BP GO:0048497 maintenance of floral organ identity IEP Neighborhood
BP GO:0048506 regulation of timing of meristematic phase transition IEP Neighborhood
BP GO:0048509 regulation of meristem development IEP Neighborhood
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048581 negative regulation of post-embryonic development IEP Neighborhood
BP GO:0048582 positive regulation of post-embryonic development IEP Neighborhood
BP GO:0048609 multicellular organismal reproductive process IEP Neighborhood
BP GO:0048832 specification of plant organ number IEP Neighborhood
BP GO:0048833 specification of floral organ number IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051093 negative regulation of developmental process IEP Neighborhood
BP GO:0051094 positive regulation of developmental process IEP Neighborhood
BP GO:0051131 chaperone-mediated protein complex assembly IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051240 positive regulation of multicellular organismal process IEP Neighborhood
BP GO:0051241 negative regulation of multicellular organismal process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0052646 alditol phosphate metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070407 oxidation-dependent protein catabolic process IEP Neighborhood
BP GO:0080051 cutin transport IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0080147 root hair cell development IEP Neighborhood
BP GO:0080149 sucrose induced translational repression IEP Neighborhood
BP GO:0080172 petal epidermis patterning IEP Neighborhood
BP GO:0090322 regulation of superoxide metabolic process IEP Neighborhood
BP GO:0090697 post-embryonic plant organ morphogenesis IEP Neighborhood
BP GO:0090698 post-embryonic plant morphogenesis IEP Neighborhood
BP GO:0090700 maintenance of plant organ identity IEP Neighborhood
BP GO:0090701 specification of plant organ identity IEP Neighborhood
BP GO:1901568 fatty acid derivative metabolic process IEP Neighborhood
BP GO:1901570 fatty acid derivative biosynthetic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000033 regulation of seed dormancy process IEP Neighborhood
BP GO:2000034 regulation of seed maturation IEP Neighborhood
BP GO:2000038 regulation of stomatal complex development IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000122 negative regulation of stomatal complex development IEP Neighborhood
BP GO:2000243 positive regulation of reproductive process IEP Neighborhood
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002487 TF_Kbox 85 172
IPR002100 TF_MADSbox 10 57
No external refs found!