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  5. AT3G02330

AT3G02330


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G02330
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g20420.1 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.03 Archaeplastida
MA_82595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_8893194g0010 No alias RNA editing factor (MEF1) 0.02 Archaeplastida
Smo462 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Smo81196 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Smo84657 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
Solyc01g081290.4.1 No alias protein kinase (PEPRK) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000002 mitochondrial genome maintenance IEP Neighborhood
BP GO:0000018 regulation of DNA recombination IEP Neighborhood
MF GO:0000217 DNA secondary structure binding IEP Neighborhood
CC GO:0000228 nuclear chromosome IEP Neighborhood
BP GO:0000278 mitotic cell cycle IEP Neighborhood
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
MF GO:0000400 four-way junction DNA binding IEP Neighborhood
CC GO:0000418 RNA polymerase IV complex IEP Neighborhood
CC GO:0000419 RNA polymerase V complex IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0000710 meiotic mismatch repair IEP Neighborhood
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
BP GO:0000731 DNA synthesis involved in DNA repair IEP Neighborhood
BP GO:0000741 karyogamy IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003997 acyl-CoA oxidase activity IEP Neighborhood
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004551 nucleotide diphosphatase activity IEP Neighborhood
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP Neighborhood
MF GO:0005539 glycosaminoglycan binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005665 RNA polymerase II, core complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006446 regulation of translational initiation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006760 folic acid-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007005 mitochondrion organization IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009561 megagametogenesis IEP Neighborhood
BP GO:0010197 polar nucleus fusion IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017151 DEAD/H-box RNA helicase binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019985 translesion synthesis IEP Neighborhood
MF GO:0030337 DNA polymerase processivity factor activity IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0032042 mitochondrial DNA metabolic process IEP Neighborhood
MF GO:0032135 DNA insertion or deletion binding IEP Neighborhood
MF GO:0032137 guanine/thymine mispair binding IEP Neighborhood
MF GO:0032138 single base insertion or deletion binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032300 mismatch repair complex IEP Neighborhood
CC GO:0032301 MutSalpha complex IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035064 methylated histone binding IEP Neighborhood
BP GO:0035510 DNA dealkylation IEP Neighborhood
BP GO:0042276 error-prone translesion synthesis IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Neighborhood
BP GO:0042780 tRNA 3'-end processing IEP Neighborhood
MF GO:0042781 3'-tRNA processing endoribonuclease activity IEP Neighborhood
MF GO:0042834 peptidoglycan binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
MF GO:0043530 adenosine 5'-monophosphoramidase activity IEP Neighborhood
BP GO:0043570 maintenance of DNA repeat elements IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP Neighborhood
BP GO:0045910 negative regulation of DNA recombination IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0047627 adenylylsulfatase activity IEP Neighborhood
MF GO:0047710 bis(5'-adenosyl)-triphosphatase activity IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
MF GO:0070567 cytidylyltransferase activity IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0070988 demethylation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
BP GO:0080111 DNA demethylation IEP Neighborhood
BP GO:0080180 2-methylguanosine metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140030 modification-dependent protein binding IEP Neighborhood
MF GO:0140034 methylation-dependent protein binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1900150 regulation of defense response to fungus IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990391 DNA repair complex IEP Neighborhood
BP GO:2000072 regulation of defense response to fungus, incompatible interaction IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 144 190
IPR002885 Pentatricopeptide_repeat 668 715
IPR002885 Pentatricopeptide_repeat 569 614
IPR002885 Pentatricopeptide_repeat 447 493
IPR002885 Pentatricopeptide_repeat 522 542
IPR002885 Pentatricopeptide_repeat 349 378
IPR002885 Pentatricopeptide_repeat 809 835
IPR002885 Pentatricopeptide_repeat 743 766
IPR002885 Pentatricopeptide_repeat 115 143
IPR002885 Pentatricopeptide_repeat 640 667
IPR002885 Pentatricopeptide_repeat 421 446
IPR002885 Pentatricopeptide_repeat 247 274
No external refs found!