AT3G02380 (COL2, ATCOL2)


Aliases : COL2, ATCOL2

Description : CONSTANS-like 2


Gene families : OG0000859 (Archaeplastida) Phylogenetic Tree(s): OG0000859_tree ,
OG_05_0001138 (LandPlants) Phylogenetic Tree(s): OG_05_0001138_tree ,
OG_06_0001151 (SeedPlants) Phylogenetic Tree(s): OG_06_0001151_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G02380
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00262710 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.09 Archaeplastida
AMTR_s00019p00192190 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
AT5G57660 ATCOL5, COL5 CONSTANS-like 5 0.07 Archaeplastida
Cre06.g278159 No alias Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre12.g534100 No alias No description available 0.03 Archaeplastida
GSVIVT01029107001 No alias Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana 0.14 Archaeplastida
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.08 Archaeplastida
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.12 Archaeplastida
LOC_Os02g08150.1 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os02g39710.1 No alias transcription factor (BBX-CO) 0.11 Archaeplastida
LOC_Os04g42020.1 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
LOC_Os06g44450.1 No alias Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os10g41100.1 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.05 Archaeplastida
MA_54929g0010 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Mp8g13470.1 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Pp3c2_31580V3.1 No alias CONSTANS-like 4 0.04 Archaeplastida
Pp3c7_25600V3.1 No alias CONSTANS-like 4 0.03 Archaeplastida
Smo185898 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.1 Archaeplastida
Solyc02g089540.3.1 No alias transcription factor (BBX-CO) 0.13 Archaeplastida
Solyc07g006630.4.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc12g096500.2.1 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Zm00001e002319_P001 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.03 Archaeplastida
Zm00001e007691_P001 No alias transcription factor (BBX-CO) 0.08 Archaeplastida
Zm00001e013804_P001 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e037706_P002 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e037873_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e041152_P001 No alias transcription factor (BBX-CO) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0009658 chloroplast organization IMP Interproscan
BP GO:0009909 regulation of flower development IMP Interproscan
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
BP GO:0000097 sulfur amino acid biosynthetic process IEP Neighborhood
MF GO:0000293 ferric-chelate reductase activity IEP Neighborhood
MF GO:0001067 regulatory region nucleic acid binding IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
BP GO:0003002 regionalization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity IEP Neighborhood
MF GO:0004364 glutathione transferase activity IEP Neighborhood
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
CC GO:0005884 actin filament IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006534 cysteine metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006809 nitric oxide biosynthetic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
BP GO:0007015 actin filament organization IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
BP GO:0007623 circadian rhythm IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0008655 pyrimidine-containing compound salvage IEP Neighborhood
MF GO:0008793 aromatic-amino-acid:2-oxoglutarate aminotransferase activity IEP Neighborhood
MF GO:0008940 nitrate reductase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009070 serine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009112 nucleobase metabolic process IEP Neighborhood
BP GO:0009269 response to desiccation IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
CC GO:0009528 plastid inner membrane IEP Neighborhood
BP GO:0009566 fertilization IEP Neighborhood
BP GO:0009567 double fertilization forming a zygote and endosperm IEP Neighborhood
BP GO:0009608 response to symbiont IEP Neighborhood
BP GO:0009610 response to symbiotic fungus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009637 response to blue light IEP Neighborhood
BP GO:0009638 phototropism IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
MF GO:0009703 nitrate reductase (NADH) activity IEP Neighborhood
CC GO:0009706 chloroplast inner membrane IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009723 response to ethylene IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009734 auxin-activated signaling pathway IEP Neighborhood
BP GO:0009737 response to abscisic acid IEP Neighborhood
BP GO:0009739 response to gibberellin IEP Neighborhood
BP GO:0009751 response to salicylic acid IEP Neighborhood
BP GO:0009753 response to jasmonic acid IEP Neighborhood
BP GO:0009838 abscission IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009902 chloroplast relocation IEP Neighborhood
BP GO:0009903 chloroplast avoidance movement IEP Neighborhood
BP GO:0009904 chloroplast accumulation movement IEP Neighborhood
BP GO:0009954 proximal/distal pattern formation IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010038 response to metal ion IEP Neighborhood
BP GO:0010099 regulation of photomorphogenesis IEP Neighborhood
BP GO:0010100 negative regulation of photomorphogenesis IEP Neighborhood
BP GO:0010118 stomatal movement IEP Neighborhood
BP GO:0010227 floral organ abscission IEP Neighborhood
BP GO:0010264 myo-inositol hexakisphosphate biosynthetic process IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
BP GO:0010304 PSII associated light-harvesting complex II catabolic process IEP Neighborhood
BP GO:0010305 leaf vascular tissue pattern formation IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010588 cotyledon vascular tissue pattern formation IEP Neighborhood
BP GO:0010600 regulation of auxin biosynthetic process IEP Neighborhood
BP GO:0014070 response to organic cyclic compound IEP Neighborhood
MF GO:0015205 nucleobase transmembrane transporter activity IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
MF GO:0016722 oxidoreductase activity, oxidizing metal ions IEP Neighborhood
MF GO:0016723 oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
MF GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019344 cysteine biosynthetic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019750 chloroplast localization IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Neighborhood
MF GO:0019904 protein domain specific binding IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032350 regulation of hormone metabolic process IEP Neighborhood
BP GO:0032922 circadian regulation of gene expression IEP Neighborhood
BP GO:0032958 inositol phosphate biosynthetic process IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033517 myo-inositol hexakisphosphate metabolic process IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
BP GO:0042126 nitrate metabolic process IEP Neighborhood
BP GO:0042128 nitrate assimilation IEP Neighborhood
BP GO:0042136 neurotransmitter biosynthetic process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
BP GO:0042493 response to drug IEP Neighborhood
BP GO:0042752 regulation of circadian rhythm IEP Neighborhood
BP GO:0042754 negative regulation of circadian rhythm IEP Neighborhood
BP GO:0043100 pyrimidine nucleobase salvage IEP Neighborhood
BP GO:0043393 regulation of protein binding IEP Neighborhood
BP GO:0043433 negative regulation of DNA-binding transcription factor activity IEP Neighborhood
BP GO:0043496 regulation of protein homodimerization activity IEP Neighborhood
BP GO:0043647 inositol phosphate metabolic process IEP Neighborhood
BP GO:0043966 histone H3 acetylation IEP Neighborhood
MF GO:0044212 transcription regulatory region DNA binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044257 cellular protein catabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
BP GO:0046165 alcohol biosynthetic process IEP Neighborhood
BP GO:0046173 polyol biosynthetic process IEP Neighborhood
BP GO:0046209 nitric oxide metabolic process IEP Neighborhood
BP GO:0046677 response to antibiotic IEP Neighborhood
BP GO:0046686 response to cadmium ion IEP Neighborhood
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Neighborhood
BP GO:0046885 regulation of hormone biosynthetic process IEP Neighborhood
BP GO:0048511 rhythmic process IEP Neighborhood
BP GO:0048571 long-day photoperiodism IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
BP GO:0048574 long-day photoperiodism, flowering IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051017 actin filament bundle assembly IEP Neighborhood
BP GO:0051090 regulation of DNA-binding transcription factor activity IEP Neighborhood
BP GO:0051098 regulation of binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051644 plastid localization IEP Neighborhood
BP GO:0051656 establishment of organelle localization IEP Neighborhood
BP GO:0051667 establishment of plastid localization IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0061572 actin filament bundle organization IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:0071483 cellular response to blue light IEP Neighborhood
BP GO:0071941 nitrogen cycle metabolic process IEP Neighborhood
BP GO:0080022 primary root development IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090354 regulation of auxin metabolic process IEP Neighborhood
BP GO:0097305 response to alcohol IEP Neighborhood
BP GO:0097435 supramolecular fiber organization IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000030 regulation of response to red or far red light IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001057 reactive nitrogen species metabolic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000315 Znf_B-box 56 101
IPR010402 CCT_domain 278 319
No external refs found!