AT3G02550 (LBD41)

Aliases : LBD41

Description : LOB domain-containing protein 41

Gene families : OG0000724 (Archaeplastida) Phylogenetic Tree(s): OG0000724_tree ,
OG_05_0000483 (LandPlants) Phylogenetic Tree(s): OG_05_0000483_tree ,
OG_06_0000437 (SeedPlants) Phylogenetic Tree(s): OG_06_0000437_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G02550
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01008284001	No alias	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.07	Archaeplastida
GSVIVT01031035001	No alias	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.16	Archaeplastida
Gb_36942	No alias	transcription factor (AS2/LOB)	0.09	Archaeplastida
Gb_36943	No alias	transcription factor (AS2/LOB)	0.03	Archaeplastida
LOC_Os01g32770.1	No alias	transcription factor (AS2/LOB)	0.05	Archaeplastida
MA_3661g0010	No alias	transcription factor (AS2/LOB)	0.02	Archaeplastida
MA_63523g0010	No alias	transcription factor (AS2/LOB)	0.03	Archaeplastida
MA_711157g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_73565g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc02g085910.4.1	No alias	no hits & (original description: none)	0.15	Archaeplastida
Solyc03g119530.3.1	No alias	transcription factor (AS2/LOB)	0.14	Archaeplastida
Zm00001e001981_P001	No alias	transcription factor (AS2/LOB)	0.05	Archaeplastida
Zm00001e005129_P001	No alias	transcription factor (AS2/LOB)	0.03	Archaeplastida
Zm00001e027415_P001	No alias	transcription factor (AS2/LOB)	0.1	Archaeplastida
Zm00001e027417_P001	No alias	transcription factor (AS2/LOB)	0.09	Archaeplastida
Zm00001e032150_P001	No alias	transcription factor (AS2/LOB)	0.08	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001666	response to hypoxia	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IDA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051193	regulation of cofactor metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	Neighborhood
BP	GO:0002238	response to molecule of fungal origin	IEP	Neighborhood
MF	GO:0003674	molecular_function	IEP	Neighborhood
MF	GO:0004022	alcohol dehydrogenase (NAD) activity	IEP	Neighborhood
MF	GO:0004457	lactate dehydrogenase activity	IEP	Neighborhood
MF	GO:0004673	protein histidine kinase activity	IEP	Neighborhood
MF	GO:0004737	pyruvate decarboxylase activity	IEP	Neighborhood
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Neighborhood
MF	GO:0004869	cysteine-type endopeptidase inhibitor activity	IEP	Neighborhood
CC	GO:0005768	endosome	IEP	Neighborhood
CC	GO:0005802	trans-Golgi network	IEP	Neighborhood
CC	GO:0005829	cytosol	IEP	Neighborhood
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006970	response to osmotic stress	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
BP	GO:0009061	anaerobic respiration	IEP	Neighborhood
BP	GO:0009611	response to wounding	IEP	Neighborhood
BP	GO:0009799	specification of symmetry	IEP	Neighborhood
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	Neighborhood
BP	GO:0009855	determination of bilateral symmetry	IEP	Neighborhood
BP	GO:0009888	tissue development	IEP	Neighborhood
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010039	response to iron ion	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010087	phloem or xylem histogenesis	IEP	Neighborhood
BP	GO:0010089	xylem development	IEP	Neighborhood
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	Neighborhood
BP	GO:0010105	negative regulation of ethylene-activated signaling pathway	IEP	Neighborhood
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Neighborhood
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Neighborhood
MF	GO:0016831	carboxy-lyase activity	IEP	Neighborhood
BP	GO:0018126	protein hydroxylation	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
BP	GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	IEP	Neighborhood
BP	GO:0019471	4-hydroxyproline metabolic process	IEP	Neighborhood
BP	GO:0019511	peptidyl-proline hydroxylation	IEP	Neighborhood
MF	GO:0030414	peptidase inhibitor activity	IEP	Neighborhood
CC	GO:0031410	cytoplasmic vesicle	IEP	Neighborhood
CC	GO:0031982	vesicle	IEP	Neighborhood
BP	GO:0034599	cellular response to oxidative stress	IEP	Neighborhood
BP	GO:0034614	cellular response to reactive oxygen species	IEP	Neighborhood
BP	GO:0035690	cellular response to drug	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
MF	GO:0042562	hormone binding	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Neighborhood
BP	GO:0045333	cellular respiration	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0050793	regulation of developmental process	IEP	Neighborhood
MF	GO:0050897	cobalt ion binding	IEP	Neighborhood
MF	GO:0051740	ethylene binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
MF	GO:0061134	peptidase regulator activity	IEP	Neighborhood
MF	GO:0061135	endopeptidase regulator activity	IEP	Neighborhood
BP	GO:0065001	specification of axis polarity	IEP	Neighborhood
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	Neighborhood
BP	GO:0070298	negative regulation of phosphorelay signal transduction system	IEP	Neighborhood
BP	GO:0070542	response to fatty acid	IEP	Neighborhood
BP	GO:0071241	cellular response to inorganic substance	IEP	Neighborhood
BP	GO:0071248	cellular response to metal ion	IEP	Neighborhood
BP	GO:0071281	cellular response to iron ion	IEP	Neighborhood
BP	GO:0071396	cellular response to lipid	IEP	Neighborhood
BP	GO:0071398	cellular response to fatty acid	IEP	Neighborhood
BP	GO:0071731	response to nitric oxide	IEP	Neighborhood
BP	GO:0071732	cellular response to nitric oxide	IEP	Neighborhood
MF	GO:0072328	alkene binding	IEP	Neighborhood
BP	GO:0097366	response to bronchodilator	IEP	Neighborhood
CC	GO:0097708	intracellular vesicle	IEP	Neighborhood
CC	GO:0098791	Golgi subcompartment	IEP	Neighborhood
BP	GO:1901699	cellular response to nitrogen compound	IEP	Neighborhood
BP	GO:1902170	cellular response to reactive nitrogen species	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004883	LOB	4	103

External Links

No external refs found!

AT3G02550 (LBD41)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation