Gb_38272

Description : component RPS24 of SSU proteome

Gene families : OG0002123 (Archaeplastida) Phylogenetic Tree(s): OG0002123_tree ,
OG_05_0001922 (LandPlants) Phylogenetic Tree(s): OG_05_0001922_tree ,
OG_06_0002453 (SeedPlants) Phylogenetic Tree(s): OG_06_0002453_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_38272
Cluster	HCCA: Cluster_129

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00193110	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
AMTR_s00056p00221450	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	Archaeplastida
AT3G04920	No alias	Ribosomal protein S24e family protein	0.27	Archaeplastida
AT5G28060	No alias	Ribosomal protein S24e family protein	0.21	Archaeplastida
Cpa\|evm.model.tig00000361.64	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	Archaeplastida
Cre10.g456200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.27	Archaeplastida
GSVIVT01001167001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	Archaeplastida
GSVIVT01021860001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.28	Archaeplastida
LOC_Os01g52490.1	No alias	component RPS24 of SSU proteome	0.17	Archaeplastida
LOC_Os02g13530.1	No alias	component RPS24 of SSU proteome	0.23	Archaeplastida
LOC_Os06g36160.1	No alias	component RPS24 of SSU proteome	0.19	Archaeplastida
MA_119841g0010	No alias	component RPS24 of SSU proteome	0.19	Archaeplastida
Mp1g10680.1	No alias	component RPS24 of SSU proteome	0.31	Archaeplastida
Pp3c12_10760V3.1	No alias	Ribosomal protein S24e family protein	0.22	Archaeplastida
Pp3c12_10870V3.1	No alias	Ribosomal protein S24e family protein	0.08	Archaeplastida
Pp3c13_22220V3.1	No alias	Ribosomal protein S24e family protein	0.26	Archaeplastida
Pp3c3_19700V3.1	No alias	Ribosomal protein S24e family protein	0.22	Archaeplastida
Smo227903	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
Smo271584	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	Archaeplastida
Solyc01g097870.3.1	No alias	component RPS24 of SSU proteome	0.2	Archaeplastida
Solyc06g084230.3.1	No alias	component RPS24 of SSU proteome	0.18	Archaeplastida
Solyc09g065330.3.1	No alias	component RPS24 of SSU proteome	0.09	Archaeplastida
Zm00001e014422_P002	No alias	component RPS24 of SSU proteome	0.24	Archaeplastida
Zm00001e019937_P001	No alias	component RPS24 of SSU proteome	0.16	Archaeplastida
Zm00001e028203_P001	No alias	component RPS24 of SSU proteome	0.26	Archaeplastida
Zm00001e030668_P001	No alias	component RPS24 of SSU proteome	0.15	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001976	Ribosomal_S24e	26	104

External Links

No external refs found!

Gb_38272

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation